Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB1P09429 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB1P09429 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB1P09429 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB1P09429 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
HMGB1P09429 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB1P09429 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
HMGB1P09429 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
HMGB1P09429 TCAF2P1-201ENST00000291129 2421 ntBASIC18.38■□□□□ 0.53
HMGB1P09429 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC18.38■□□□□ 0.53
HMGB1P09429 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB1P09429 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
HMGB1P09429 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC18.38■□□□□ 0.53
HMGB1P09429 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB1P09429 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB1P09429 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC18.37■□□□□ 0.53
HMGB1P09429 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB1P09429 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
HMGB1P09429 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC18.37■□□□□ 0.53
HMGB1P09429 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB1P09429 CICP11-201ENST00000434745 2827 ntBASIC18.37■□□□□ 0.53
HMGB1P09429 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB1P09429 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC18.37■□□□□ 0.53
HMGB1P09429 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB1P09429 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB1P09429 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC18.37■□□□□ 0.53
HMGB1P09429 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB1P09429 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB1P09429 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC18.37■□□□□ 0.53
HMGB1P09429 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
HMGB1P09429 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB1P09429 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC18.37■□□□□ 0.53
HMGB1P09429 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB1P09429 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB1P09429 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB1P09429 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB1P09429 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB1P09429 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
HMGB1P09429 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC18.37■□□□□ 0.53
HMGB1P09429 FAM8A3P-201ENST00000427218 844 ntBASIC18.37■□□□□ 0.53
HMGB1P09429 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
HMGB1P09429 PFN2-205ENST00000461868 613 ntTSL 2 BASIC18.37■□□□□ 0.53
HMGB1P09429 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC18.37■□□□□ 0.53
HMGB1P09429 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC18.37■□□□□ 0.53
HMGB1P09429 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB1P09429 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC18.37■□□□□ 0.53
HMGB1P09429 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC18.37■□□□□ 0.53
HMGB1P09429 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC18.37■□□□□ 0.53
HMGB1P09429 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC18.37■□□□□ 0.53
HMGB1P09429 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB1P09429 AC004840.1-201ENST00000636359 365 ntBASIC18.37■□□□□ 0.53
HMGB1P09429 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB1P09429 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
HMGB1P09429 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC18.37■□□□□ 0.53
HMGB1P09429 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB1P09429 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC18.37■□□□□ 0.53
HMGB1P09429 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC18.37■□□□□ 0.53
HMGB1P09429 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
HMGB1P09429 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
HMGB1P09429 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC18.37■□□□□ 0.53
HMGB1P09429 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB1P09429 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
HMGB1P09429 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB1P09429 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC18.37■□□□□ 0.53
HMGB1P09429 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB1P09429 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB1P09429 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB1P09429 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC18.36■□□□□ 0.53
HMGB1P09429 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC18.36■□□□□ 0.53
HMGB1P09429 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC18.36■□□□□ 0.53
HMGB1P09429 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGB1P09429 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGB1P09429 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HMGB1P09429 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HMGB1P09429 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HMGB1P09429 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGB1P09429 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
HMGB1P09429 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
HMGB1P09429 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HMGB1P09429 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HMGB1P09429 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGB1P09429 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGB1P09429 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGB1P09429 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
HMGB1P09429 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HMGB1P09429 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC18.36■□□□□ 0.53
HMGB1P09429 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC18.36■□□□□ 0.53
HMGB1P09429 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGB1P09429 RASL12-203ENST00000434605 982 ntTSL 2 BASIC18.36■□□□□ 0.53
HMGB1P09429 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HMGB1P09429 RHOA-206ENST00000454011 889 ntTSL 2 BASIC18.36■□□□□ 0.53
HMGB1P09429 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC18.36■□□□□ 0.53
HMGB1P09429 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGB1P09429 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC18.36■□□□□ 0.53
HMGB1P09429 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC18.36■□□□□ 0.53
HMGB1P09429 STOM-203ENST00000538954 1257 ntTSL 5 BASIC18.36■□□□□ 0.53
HMGB1P09429 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC18.36■□□□□ 0.53
HMGB1P09429 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC18.36■□□□□ 0.53
HMGB1P09429 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC18.36■□□□□ 0.53
HMGB1P09429 AL158212.4-201ENST00000624062 1286 ntBASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms