Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
SPTA1P02549 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SPTA1P02549 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SPTA1P02549 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SPTA1P02549 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC14.07□□□□□ -0.16
SPTA1P02549 AL354989.2-201ENST00000435838 1540 ntBASIC14.07□□□□□ -0.16
SPTA1P02549 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC14.07□□□□□ -0.16
SPTA1P02549 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SPTA1P02549 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC14.07□□□□□ -0.16
SPTA1P02549 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SPTA1P02549 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SPTA1P02549 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
SPTA1P02549 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC14.07□□□□□ -0.16
SPTA1P02549 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SPTA1P02549 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
SPTA1P02549 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SPTA1P02549 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC14.07□□□□□ -0.16
SPTA1P02549 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC14.07□□□□□ -0.16
SPTA1P02549 Z97180.1-201ENST00000445173 988 ntBASIC14.07□□□□□ -0.16
SPTA1P02549 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC14.07□□□□□ -0.16
SPTA1P02549 PRKXP1-201ENST00000561423 1122 ntBASIC14.07□□□□□ -0.16
SPTA1P02549 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC14.07□□□□□ -0.16
SPTA1P02549 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
SPTA1P02549 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC14.07□□□□□ -0.16
SPTA1P02549 WDR7-208ENST00000589935 544 ntTSL 4 BASIC14.07□□□□□ -0.16
SPTA1P02549 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC14.07□□□□□ -0.16
SPTA1P02549 AF254983.2-201ENST00000612331 135 ntBASIC14.07□□□□□ -0.16
SPTA1P02549 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC14.07□□□□□ -0.16
SPTA1P02549 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC14.07□□□□□ -0.16
SPTA1P02549 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SPTA1P02549 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
SPTA1P02549 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SPTA1P02549 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SPTA1P02549 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
SPTA1P02549 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SPTA1P02549 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.07□□□□□ -0.16
SPTA1P02549 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC14.07□□□□□ -0.16
SPTA1P02549 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC14.07□□□□□ -0.16
SPTA1P02549 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
SPTA1P02549 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
SPTA1P02549 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SPTA1P02549 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC14.07□□□□□ -0.16
SPTA1P02549 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SPTA1P02549 RNF165-205ENST00000588679 2904 ntBASIC14.07□□□□□ -0.16
SPTA1P02549 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC14.06□□□□□ -0.16
SPTA1P02549 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SPTA1P02549 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC14.06□□□□□ -0.16
SPTA1P02549 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC14.06□□□□□ -0.16
SPTA1P02549 NSD1-211ENST00000511258 809 ntTSL 3 BASIC14.06□□□□□ -0.16
SPTA1P02549 AC025181.2-201ENST00000606994 802 ntBASIC14.06□□□□□ -0.16
SPTA1P02549 AP005019.2-201ENST00000615104 511 ntBASIC14.06□□□□□ -0.16
SPTA1P02549 AC091544.8-201ENST00000619490 361 ntBASIC14.06□□□□□ -0.16
SPTA1P02549 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC14.06□□□□□ -0.16
SPTA1P02549 YRDCP1-201ENST00000621419 643 ntBASIC14.06□□□□□ -0.16
SPTA1P02549 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SPTA1P02549 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SPTA1P02549 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
SPTA1P02549 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SPTA1P02549 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SPTA1P02549 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
SPTA1P02549 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC14.06□□□□□ -0.16
SPTA1P02549 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
SPTA1P02549 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
SPTA1P02549 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
SPTA1P02549 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
SPTA1P02549 CA12-203ENST00000422263 2556 ntTSL 2 BASIC14.06□□□□□ -0.16
SPTA1P02549 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
SPTA1P02549 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SPTA1P02549 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
SPTA1P02549 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC14.06□□□□□ -0.16
SPTA1P02549 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SPTA1P02549 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC14.06□□□□□ -0.16
SPTA1P02549 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SPTA1P02549 AL136309.1-201ENST00000403917 691 ntBASIC14.06□□□□□ -0.16
SPTA1P02549 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC14.06□□□□□ -0.16
SPTA1P02549 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SPTA1P02549 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC14.06□□□□□ -0.16
SPTA1P02549 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC14.06□□□□□ -0.16
SPTA1P02549 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC14.06□□□□□ -0.16
SPTA1P02549 AC009084.3-201ENST00000623356 437 ntBASIC14.06□□□□□ -0.16
SPTA1P02549 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
SPTA1P02549 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC14.06□□□□□ -0.16
SPTA1P02549 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SPTA1P02549 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SPTA1P02549 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC14.06□□□□□ -0.16
SPTA1P02549 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
SPTA1P02549 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
SPTA1P02549 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SPTA1P02549 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
SPTA1P02549 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
SPTA1P02549 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC14.06□□□□□ -0.16
SPTA1P02549 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SPTA1P02549 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
SPTA1P02549 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SPTA1P02549 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC14.06□□□□□ -0.16
SPTA1P02549 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
SPTA1P02549 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
SPTA1P02549 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SPTA1P02549 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SPTA1P02549 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms