Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC15□□□□□ -0.01
SEMA3DO95025 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC15□□□□□ -0.01
SEMA3DO95025 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
SEMA3DO95025 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
SEMA3DO95025 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC15□□□□□ -0.01
SEMA3DO95025 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15□□□□□ -0.01
SEMA3DO95025 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC15□□□□□ -0.01
SEMA3DO95025 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SEMA3DO95025 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
SEMA3DO95025 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
SEMA3DO95025 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SEMA3DO95025 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15□□□□□ -0.01
SEMA3DO95025 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
SEMA3DO95025 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SEMA3DO95025 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SEMA3DO95025 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
SEMA3DO95025 CENPM-205ENST00000404067 905 ntTSL 3 BASIC15□□□□□ -0.01
SEMA3DO95025 RPL5P21-201ENST00000404620 815 ntBASIC15□□□□□ -0.01
SEMA3DO95025 CENPM-206ENST00000407253 818 ntTSL 2 BASIC15□□□□□ -0.01
SEMA3DO95025 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC15□□□□□ -0.01
SEMA3DO95025 AC074338.1-201ENST00000416825 156 ntBASIC15□□□□□ -0.01
SEMA3DO95025 USP40-206ENST00000443711 628 ntTSL 2 BASIC15□□□□□ -0.01
SEMA3DO95025 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC15□□□□□ -0.01
SEMA3DO95025 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC15□□□□□ -0.01
SEMA3DO95025 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SEMA3DO95025 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC15□□□□□ -0.01
SEMA3DO95025 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC15□□□□□ -0.01
SEMA3DO95025 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC15□□□□□ -0.01
SEMA3DO95025 AC093028.1-201ENST00000622998 982 ntBASIC15□□□□□ -0.01
SEMA3DO95025 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC15□□□□□ -0.01
SEMA3DO95025 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
SEMA3DO95025 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SEMA3DO95025 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC15□□□□□ -0.01
SEMA3DO95025 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC15□□□□□ -0.01
SEMA3DO95025 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SEMA3DO95025 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
SEMA3DO95025 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC15□□□□□ -0.01
SEMA3DO95025 AC112693.3-201ENST00000624819 1983 ntBASIC15□□□□□ -0.01
SEMA3DO95025 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SEMA3DO95025 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC15□□□□□ -0.01
SEMA3DO95025 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SEMA3DO95025 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SEMA3DO95025 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SEMA3DO95025 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC14.99□□□□□ -0.01
SEMA3DO95025 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC14.99□□□□□ -0.01
SEMA3DO95025 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SEMA3DO95025 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SEMA3DO95025 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
SEMA3DO95025 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
SEMA3DO95025 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SEMA3DO95025 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
SEMA3DO95025 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SEMA3DO95025 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC14.99□□□□□ -0.01
SEMA3DO95025 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SEMA3DO95025 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SEMA3DO95025 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SEMA3DO95025 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC14.99□□□□□ -0.01
SEMA3DO95025 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SEMA3DO95025 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.99□□□□□ -0.01
SEMA3DO95025 ZNF890P-202ENST00000530367 1156 ntBASIC14.99□□□□□ -0.01
SEMA3DO95025 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC14.99□□□□□ -0.01
SEMA3DO95025 AL512361.1-201ENST00000554200 418 ntBASIC14.99□□□□□ -0.01
SEMA3DO95025 RPL28-205ENST00000558131 444 ntTSL 5 BASIC14.99□□□□□ -0.01
SEMA3DO95025 AC010336.2-201ENST00000564226 506 ntBASIC14.99□□□□□ -0.01
SEMA3DO95025 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC14.99□□□□□ -0.01
SEMA3DO95025 AC074044.1-201ENST00000609673 707 ntBASIC14.99□□□□□ -0.01
SEMA3DO95025 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC14.99□□□□□ -0.01
SEMA3DO95025 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC14.99□□□□□ -0.01
SEMA3DO95025 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC14.99□□□□□ -0.01
SEMA3DO95025 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SEMA3DO95025 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC14.99□□□□□ -0.01
SEMA3DO95025 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC14.99□□□□□ -0.01
SEMA3DO95025 AL109954.1-202ENST00000564051 2148 ntBASIC14.99□□□□□ -0.01
SEMA3DO95025 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC14.99□□□□□ -0.01
SEMA3DO95025 AC006058.4-201ENST00000624016 1670 ntBASIC14.99□□□□□ -0.01
SEMA3DO95025 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SEMA3DO95025 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
SEMA3DO95025 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SEMA3DO95025 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
SEMA3DO95025 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
SEMA3DO95025 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SEMA3DO95025 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC14.99□□□□□ -0.01
SEMA3DO95025 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SEMA3DO95025 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC14.99□□□□□ -0.01
SEMA3DO95025 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
SEMA3DO95025 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC14.98□□□□□ -0.01
SEMA3DO95025 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.98□□□□□ -0.01
SEMA3DO95025 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.98□□□□□ -0.01
SEMA3DO95025 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
SEMA3DO95025 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC14.98□□□□□ -0.01
SEMA3DO95025 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SEMA3DO95025 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SEMA3DO95025 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
SEMA3DO95025 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SEMA3DO95025 AC087499.5-201ENST00000452760 1342 ntBASIC14.98□□□□□ -0.01
SEMA3DO95025 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SEMA3DO95025 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC14.98□□□□□ -0.01
SEMA3DO95025 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SEMA3DO95025 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
SEMA3DO95025 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms