Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 F11R-206ENST00000621309 4770 ntTSL 5 BASIC14.96□□□□□ -0.02
PCDHGA1Q9Y5H4 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
PCDHGA1Q9Y5H4 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC14.96□□□□□ -0.02
PCDHGA1Q9Y5H4 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
PCDHGA1Q9Y5H4 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 HNRNPA1P32-201ENST00000396326 963 ntBASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 MIR663B-201ENST00000408361 115 ntBASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 NUS1P3-201ENST00000423502 862 ntBASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 AC114812.1-204ENST00000449669 728 ntBASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 UPF3AP2-201ENST00000457924 1132 ntBASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 MIR3619-201ENST00000579667 83 ntBASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 AGGF1P2-201ENST00000426656 2106 ntBASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PCDHGA1Q9Y5H4 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 REEP1-202ENST00000453231 940 ntTSL 2 BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 AC126915.1-201ENST00000522847 1038 ntBASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 AC078925.2-201ENST00000624013 1973 ntBASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PCDHGA1Q9Y5H4 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms