Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 SLC9A8-201ENST00000361573 6094 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
CHMP1AQ9HD42 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 AL161645.1-201ENST00000622716 1255 ntBASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
CHMP1AQ9HD42 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 LOX-206ENST00000639739 1626 ntTSL 5 BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 NOX5-201ENST00000260364 8592 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 AC134407.2-201ENST00000625089 1978 ntBASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 RHOQP3-201ENST00000437982 621 ntBASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 AC140658.5-201ENST00000438532 169 ntBASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 AC002347.1-201ENST00000569543 541 ntBASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 AC007191.1-201ENST00000623179 2995 ntBASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 WASH6P-202ENST00000359512 1437 ntBASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 AC025580.3-201ENST00000617932 1424 ntBASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 AC007686.3-201ENST00000619017 3487 ntBASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC13.53□□□□□ -0.24
CHMP1AQ9HD42 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms