Protein–RNA interactions for Protein: Q9BT76

UPK3B, Uroplakin-3b, humanhuman

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3BQ9BT76 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 AC126177.1-201ENST00000547829 2218 ntBASIC10.95□□□□□ -0.66
UPK3BQ9BT76 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 ELP6-209ENST00000446787 894 ntTSL 3 BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 CRB3P1-201ENST00000449338 276 ntBASIC10.95□□□□□ -0.66
UPK3BQ9BT76 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 RNA5-8SN1-201ENST00000610460 153 ntBASIC10.95□□□□□ -0.66
UPK3BQ9BT76 TEX48-202ENST00000612244 662 ntTSL 3 BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 RNA5-8SN5-202ENST00000612463 153 ntBASIC10.95□□□□□ -0.66
UPK3BQ9BT76 RNA5-8SN4-201ENST00000613359 153 ntBASIC10.95□□□□□ -0.66
UPK3BQ9BT76 RNA5-8SN5-201ENST00000619471 153 ntBASIC10.95□□□□□ -0.66
UPK3BQ9BT76 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 AC004840.1-201ENST00000636359 365 ntBASIC10.95□□□□□ -0.66
UPK3BQ9BT76 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 KCP-203ENST00000610776 5108 ntTSL 5 BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 MBP-202ENST00000355994 2772 ntTSL 5 BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 AC079328.2-201ENST00000561241 3354 ntBASIC10.94□□□□□ -0.66
UPK3BQ9BT76 ZBTB45P2-201ENST00000452245 1531 ntBASIC10.94□□□□□ -0.66
UPK3BQ9BT76 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 DKFZP434A062-201ENST00000573103 5021 ntBASIC10.94□□□□□ -0.66
UPK3BQ9BT76 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 AL513523.2-202ENST00000427283 2040 ntBASIC10.94□□□□□ -0.66
UPK3BQ9BT76 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 TDG-209ENST00000544861 1387 ntTSL 2 BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 ALOX12P2-203ENST00000570921 1945 ntBASIC10.94□□□□□ -0.66
UPK3BQ9BT76 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 DFFBP1-201ENST00000433250 979 ntBASIC10.94□□□□□ -0.66
UPK3BQ9BT76 RASL12-203ENST00000434605 982 ntTSL 2 BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 AL353779.1-201ENST00000434793 351 ntBASIC10.94□□□□□ -0.66
UPK3BQ9BT76 HIST3H2BA-201ENST00000436555 524 ntBASIC10.94□□□□□ -0.66
UPK3BQ9BT76 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
UPK3BQ9BT76 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC10.94□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms