Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 AC006058.4-201ENST00000624016 1670 ntBASIC16■□□□□ 0.15
TRIM56Q9BRZ2 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 ACTG1P14-201ENST00000446382 1122 ntBASIC16■□□□□ 0.15
TRIM56Q9BRZ2 AL139010.1-201ENST00000454878 894 ntBASIC16■□□□□ 0.15
TRIM56Q9BRZ2 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 MAX-210ENST00000555419 765 ntTSL 5 BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 AC079781.4-201ENST00000641908 219 ntBASIC16■□□□□ 0.15
TRIM56Q9BRZ2 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM56Q9BRZ2 OR2I1P-210ENST00000642037 4691 ntBASIC16■□□□□ 0.15
TRIM56Q9BRZ2 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 AC004461.1-201ENST00000412461 403 ntBASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 GPS2P2-201ENST00000430745 888 ntBASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 EEF1DP4-201ENST00000446006 880 ntBASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC15.99■□□□□ 0.15
TRIM56Q9BRZ2 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms