Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 AL033527.4-201ENST00000641026 673 ntBASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 CHCHD2P3-201ENST00000603038 451 ntBASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 TNRC18P2-201ENST00000417666 2714 ntBASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 FAM8A2P-201ENST00000528813 1142 ntBASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 API5-211ENST00000534695 560 ntTSL 5 BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 HR-201ENST00000312841 5351 ntTSL 5 BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 ZEB1-AS1-208ENST00000607166 2503 ntBASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC15.85■□□□□ 0.13
SHROOM3Q8TF72 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SHROOM3Q8TF72 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC15.84■□□□□ 0.13
SHROOM3Q8TF72 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC15.84■□□□□ 0.13
SHROOM3Q8TF72 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC15.84■□□□□ 0.13
SHROOM3Q8TF72 RARRES2P5-201ENST00000564013 466 ntBASIC15.84■□□□□ 0.13
SHROOM3Q8TF72 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
SHROOM3Q8TF72 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC15.84■□□□□ 0.13
SHROOM3Q8TF72 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC15.84■□□□□ 0.13
SHROOM3Q8TF72 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC15.84■□□□□ 0.13
SHROOM3Q8TF72 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC15.84■□□□□ 0.13
SHROOM3Q8TF72 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SHROOM3Q8TF72 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SHROOM3Q8TF72 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
SHROOM3Q8TF72 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC15.84■□□□□ 0.13
SHROOM3Q8TF72 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SHROOM3Q8TF72 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC15.84■□□□□ 0.13
SHROOM3Q8TF72 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
SHROOM3Q8TF72 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC15.84■□□□□ 0.13
SHROOM3Q8TF72 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.84■□□□□ 0.13
SHROOM3Q8TF72 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SHROOM3Q8TF72 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
SHROOM3Q8TF72 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SHROOM3Q8TF72 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
SHROOM3Q8TF72 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
SHROOM3Q8TF72 HLA-DPB2-205ENST00000435074 1188 ntBASIC15.84■□□□□ 0.13
SHROOM3Q8TF72 RRP7BP-205ENST00000566851 833 ntBASIC15.84■□□□□ 0.13
SHROOM3Q8TF72 AC084346.2-201ENST00000607097 949 ntBASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms