Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGCS1Q01581 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HMGCS1Q01581 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGCS1Q01581 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
HMGCS1Q01581 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
HMGCS1Q01581 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
HMGCS1Q01581 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
HMGCS1Q01581 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0.01
HMGCS1Q01581 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0.01
HMGCS1Q01581 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
HMGCS1Q01581 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
HMGCS1Q01581 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
HMGCS1Q01581 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC15.08■□□□□ 0.01
HMGCS1Q01581 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
HMGCS1Q01581 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
HMGCS1Q01581 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HMGCS1Q01581 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
HMGCS1Q01581 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HMGCS1Q01581 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC15.08■□□□□ 0
HMGCS1Q01581 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC15.08■□□□□ 0
HMGCS1Q01581 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HMGCS1Q01581 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
HMGCS1Q01581 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HMGCS1Q01581 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC15.08■□□□□ 0
HMGCS1Q01581 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
HMGCS1Q01581 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC15.08■□□□□ 0
HMGCS1Q01581 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC15.08■□□□□ 0
HMGCS1Q01581 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
HMGCS1Q01581 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC15.08■□□□□ 0
HMGCS1Q01581 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC15.08■□□□□ 0
HMGCS1Q01581 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC15.08■□□□□ 0
HMGCS1Q01581 PTK7-212ENST00000476760 902 ntTSL 2 BASIC15.08■□□□□ 0
HMGCS1Q01581 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC15.08■□□□□ 0
HMGCS1Q01581 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC15.08■□□□□ 0
HMGCS1Q01581 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC15.08■□□□□ 0
HMGCS1Q01581 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HMGCS1Q01581 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC15.08■□□□□ 0
HMGCS1Q01581 AP001160.2-201ENST00000596071 487 ntBASIC15.08■□□□□ 0
HMGCS1Q01581 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC15.08■□□□□ 0
HMGCS1Q01581 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC15.08■□□□□ 0
HMGCS1Q01581 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC15.08■□□□□ 0
HMGCS1Q01581 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
HMGCS1Q01581 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.08■□□□□ 0
HMGCS1Q01581 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC15.08■□□□□ 0
HMGCS1Q01581 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HMGCS1Q01581 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HMGCS1Q01581 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
HMGCS1Q01581 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC15.08■□□□□ 0
HMGCS1Q01581 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
HMGCS1Q01581 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.08■□□□□ 0
HMGCS1Q01581 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC15.08■□□□□ 0
HMGCS1Q01581 PCDHA3-202ENST00000532566 4594 ntBASIC15.08■□□□□ 0
HMGCS1Q01581 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC15.08■□□□□ 0
HMGCS1Q01581 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC15.08■□□□□ 0
HMGCS1Q01581 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC15.08■□□□□ 0
HMGCS1Q01581 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC15.08■□□□□ 0
HMGCS1Q01581 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
HMGCS1Q01581 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC15.08■□□□□ 0
HMGCS1Q01581 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC15.08■□□□□ 0
HMGCS1Q01581 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
HMGCS1Q01581 CICP11-201ENST00000434745 2827 ntBASIC15.07■□□□□ 0
HMGCS1Q01581 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
HMGCS1Q01581 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.07■□□□□ 0
HMGCS1Q01581 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC15.07■□□□□ 0
HMGCS1Q01581 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HMGCS1Q01581 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC15.07■□□□□ 0
HMGCS1Q01581 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC15.07■□□□□ 0
HMGCS1Q01581 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
HMGCS1Q01581 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC15.07■□□□□ 0
HMGCS1Q01581 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC15.07■□□□□ 0
HMGCS1Q01581 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC15.07■□□□□ 0
HMGCS1Q01581 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HMGCS1Q01581 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
HMGCS1Q01581 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC15.07■□□□□ 0
HMGCS1Q01581 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC15.07■□□□□ 0
HMGCS1Q01581 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC15.07■□□□□ 0
HMGCS1Q01581 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC15.07■□□□□ 0
HMGCS1Q01581 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HMGCS1Q01581 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HMGCS1Q01581 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HMGCS1Q01581 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC15.07■□□□□ 0
HMGCS1Q01581 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC15.07■□□□□ 0
HMGCS1Q01581 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC15.07■□□□□ 0
HMGCS1Q01581 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC15.07■□□□□ 0
HMGCS1Q01581 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC15.07■□□□□ 0
HMGCS1Q01581 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC15.07■□□□□ 0
HMGCS1Q01581 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC15.07■□□□□ 0
HMGCS1Q01581 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
HMGCS1Q01581 AL079307.3-201ENST00000556114 283 ntBASIC15.07■□□□□ 0
HMGCS1Q01581 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC15.07■□□□□ 0
HMGCS1Q01581 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC15.07■□□□□ 0
HMGCS1Q01581 METTL23-205ENST00000588302 925 ntTSL 5 BASIC15.07■□□□□ 0
HMGCS1Q01581 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.07■□□□□ 0
HMGCS1Q01581 AP001059.3-201ENST00000619053 235 ntBASIC15.07■□□□□ 0
HMGCS1Q01581 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.07■□□□□ 0
HMGCS1Q01581 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC15.07■□□□□ 0
HMGCS1Q01581 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
HMGCS1Q01581 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC15.07■□□□□ 0
HMGCS1Q01581 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.07■□□□□ 0
HMGCS1Q01581 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms