Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC17.61■□□□□ 0.41
CCNA1P78396 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC17.61■□□□□ 0.41
CCNA1P78396 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCNA1P78396 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCNA1P78396 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCNA1P78396 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCNA1P78396 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.6■□□□□ 0.41
CCNA1P78396 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCNA1P78396 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC17.6■□□□□ 0.41
CCNA1P78396 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.6■□□□□ 0.41
CCNA1P78396 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC17.6■□□□□ 0.41
CCNA1P78396 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCNA1P78396 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCNA1P78396 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
CCNA1P78396 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCNA1P78396 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCNA1P78396 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCNA1P78396 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCNA1P78396 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCNA1P78396 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCNA1P78396 COX5BP1-201ENST00000507622 393 ntBASIC17.6■□□□□ 0.41
CCNA1P78396 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC17.6■□□□□ 0.41
CCNA1P78396 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC17.6■□□□□ 0.41
CCNA1P78396 RN7SL190P-201ENST00000582519 257 ntBASIC17.6■□□□□ 0.41
CCNA1P78396 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC17.6■□□□□ 0.41
CCNA1P78396 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCNA1P78396 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC17.6■□□□□ 0.41
CCNA1P78396 AC007787.1-201ENST00000588095 1583 ntBASIC17.6■□□□□ 0.41
CCNA1P78396 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CCNA1P78396 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCNA1P78396 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCNA1P78396 AC018695.7-201ENST00000624587 2492 ntBASIC17.6■□□□□ 0.41
CCNA1P78396 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.6■□□□□ 0.41
CCNA1P78396 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC17.6■□□□□ 0.41
CCNA1P78396 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
CCNA1P78396 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCNA1P78396 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCNA1P78396 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC17.6■□□□□ 0.41
CCNA1P78396 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC17.6■□□□□ 0.41
CCNA1P78396 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCNA1P78396 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCNA1P78396 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCNA1P78396 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CCNA1P78396 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCNA1P78396 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCNA1P78396 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCNA1P78396 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCNA1P78396 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCNA1P78396 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCNA1P78396 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCNA1P78396 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC17.59■□□□□ 0.41
CCNA1P78396 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CCNA1P78396 AC069224.1-201ENST00000566372 1715 ntBASIC17.59■□□□□ 0.41
CCNA1P78396 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCNA1P78396 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
CCNA1P78396 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
CCNA1P78396 MTHFR-217ENST00000641820 1569 ntBASIC17.59■□□□□ 0.41
CCNA1P78396 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
CCNA1P78396 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCNA1P78396 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC17.59■□□□□ 0.41
CCNA1P78396 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCNA1P78396 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCNA1P78396 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC17.59■□□□□ 0.41
CCNA1P78396 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC17.59■□□□□ 0.41
CCNA1P78396 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCNA1P78396 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCNA1P78396 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC17.59■□□□□ 0.41
CCNA1P78396 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
CCNA1P78396 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC17.59■□□□□ 0.41
CCNA1P78396 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC17.59■□□□□ 0.41
CCNA1P78396 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCNA1P78396 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCNA1P78396 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCNA1P78396 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCNA1P78396 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC17.59■□□□□ 0.41
CCNA1P78396 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
CCNA1P78396 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CCNA1P78396 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.59■□□□□ 0.41
CCNA1P78396 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
CCNA1P78396 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.59■□□□□ 0.41
CCNA1P78396 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC17.59■□□□□ 0.41
CCNA1P78396 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCNA1P78396 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.59■□□□□ 0.41
CCNA1P78396 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CCNA1P78396 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC17.58■□□□□ 0.41
CCNA1P78396 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.41
CCNA1P78396 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCNA1P78396 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.58■□□□□ 0.41
CCNA1P78396 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCNA1P78396 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
CCNA1P78396 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC17.58■□□□□ 0.4
CCNA1P78396 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC17.58■□□□□ 0.4
CCNA1P78396 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC17.58■□□□□ 0.4
CCNA1P78396 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC17.58■□□□□ 0.4
CCNA1P78396 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CCNA1P78396 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCNA1P78396 REEP1-202ENST00000453231 940 ntTSL 2 BASIC17.58■□□□□ 0.4
CCNA1P78396 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
CCNA1P78396 FOS-206ENST00000555347 1280 ntTSL 2 BASIC17.58■□□□□ 0.4
CCNA1P78396 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms