Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
YBX1P67809 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
YBX1P67809 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
YBX1P67809 FAM45BP-202ENST00000592932 1624 ntBASIC15.22■□□□□ 0.03
YBX1P67809 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
YBX1P67809 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
YBX1P67809 LINC00552-201ENST00000625151 2579 ntBASIC15.22■□□□□ 0.03
YBX1P67809 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
YBX1P67809 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
YBX1P67809 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
YBX1P67809 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
YBX1P67809 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
YBX1P67809 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
YBX1P67809 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
YBX1P67809 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
YBX1P67809 RPL13P2-201ENST00000440687 659 ntBASIC15.22■□□□□ 0.03
YBX1P67809 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC15.22■□□□□ 0.03
YBX1P67809 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC15.22■□□□□ 0.03
YBX1P67809 RNA5-8SN1-201ENST00000610460 153 ntBASIC15.22■□□□□ 0.03
YBX1P67809 RNA5-8SN5-202ENST00000612463 153 ntBASIC15.22■□□□□ 0.03
YBX1P67809 RNA5-8SN4-201ENST00000613359 153 ntBASIC15.22■□□□□ 0.03
YBX1P67809 RNA5-8SN5-201ENST00000619471 153 ntBASIC15.22■□□□□ 0.03
YBX1P67809 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC15.22■□□□□ 0.03
YBX1P67809 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
YBX1P67809 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC15.22■□□□□ 0.03
YBX1P67809 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
YBX1P67809 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
YBX1P67809 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
YBX1P67809 USP28-214ENST00000545540 3431 ntTSL 2 BASIC15.22■□□□□ 0.03
YBX1P67809 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
YBX1P67809 C1R-202ENST00000536053 2347 ntTSL 2 BASIC15.22■□□□□ 0.03
YBX1P67809 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
YBX1P67809 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
YBX1P67809 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC15.22■□□□□ 0.03
YBX1P67809 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.22■□□□□ 0.03
YBX1P67809 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
YBX1P67809 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC15.22■□□□□ 0.03
YBX1P67809 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC15.21■□□□□ 0.03
YBX1P67809 AGAP7P-201ENST00000582299 2062 ntBASIC15.21■□□□□ 0.03
YBX1P67809 AGAP14-201ENST00000624701 2060 ntBASIC15.21■□□□□ 0.03
YBX1P67809 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
YBX1P67809 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
YBX1P67809 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
YBX1P67809 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
YBX1P67809 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.21■□□□□ 0.03
YBX1P67809 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
YBX1P67809 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
YBX1P67809 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
YBX1P67809 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
YBX1P67809 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
YBX1P67809 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.21■□□□□ 0.03
YBX1P67809 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC15.21■□□□□ 0.03
YBX1P67809 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
YBX1P67809 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
YBX1P67809 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC15.21■□□□□ 0.03
YBX1P67809 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC15.21■□□□□ 0.03
YBX1P67809 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC15.21■□□□□ 0.03
YBX1P67809 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC15.21■□□□□ 0.03
YBX1P67809 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC15.21■□□□□ 0.03
YBX1P67809 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC15.21■□□□□ 0.03
YBX1P67809 REEP4-207ENST00000523293 913 ntTSL 3 BASIC15.21■□□□□ 0.03
YBX1P67809 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC15.21■□□□□ 0.03
YBX1P67809 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC15.21■□□□□ 0.03
YBX1P67809 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC15.21■□□□□ 0.03
YBX1P67809 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC15.21■□□□□ 0.03
YBX1P67809 MIR4745-201ENST00000577608 62 ntBASIC15.21■□□□□ 0.03
YBX1P67809 MIR3197-201ENST00000582241 73 ntBASIC15.21■□□□□ 0.03
YBX1P67809 AC074044.1-201ENST00000609673 707 ntBASIC15.21■□□□□ 0.03
YBX1P67809 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
YBX1P67809 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC15.21■□□□□ 0.03
YBX1P67809 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
YBX1P67809 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
YBX1P67809 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
YBX1P67809 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
YBX1P67809 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
YBX1P67809 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
YBX1P67809 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
YBX1P67809 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
YBX1P67809 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
YBX1P67809 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
YBX1P67809 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
YBX1P67809 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
YBX1P67809 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
YBX1P67809 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
YBX1P67809 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC15.2■□□□□ 0.02
YBX1P67809 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
YBX1P67809 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC15.2■□□□□ 0.02
YBX1P67809 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
YBX1P67809 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
YBX1P67809 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
YBX1P67809 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
YBX1P67809 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
YBX1P67809 AC007686.3-201ENST00000619017 3487 ntBASIC15.2■□□□□ 0.02
YBX1P67809 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
YBX1P67809 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
YBX1P67809 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC15.2■□□□□ 0.02
YBX1P67809 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC15.2■□□□□ 0.02
YBX1P67809 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC15.2■□□□□ 0.02
YBX1P67809 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC15.2■□□□□ 0.02
YBX1P67809 AC002472.2-201ENST00000442739 958 ntBASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms