Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC16.14■□□□□ 0.17
NEK3P51956 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
NEK3P51956 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC16.14■□□□□ 0.17
NEK3P51956 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
NEK3P51956 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
NEK3P51956 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NEK3P51956 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC16.14■□□□□ 0.17
NEK3P51956 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC16.14■□□□□ 0.17
NEK3P51956 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
NEK3P51956 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
NEK3P51956 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.14■□□□□ 0.17
NEK3P51956 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
NEK3P51956 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC16.14■□□□□ 0.17
NEK3P51956 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NEK3P51956 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
NEK3P51956 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NEK3P51956 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC16.14■□□□□ 0.17
NEK3P51956 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NEK3P51956 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NEK3P51956 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC16.13■□□□□ 0.17
NEK3P51956 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
NEK3P51956 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
NEK3P51956 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.13■□□□□ 0.17
NEK3P51956 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NEK3P51956 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
NEK3P51956 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC16.13■□□□□ 0.17
NEK3P51956 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NEK3P51956 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NEK3P51956 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC16.13■□□□□ 0.17
NEK3P51956 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC16.13■□□□□ 0.17
NEK3P51956 AL691432.1-201ENST00000596308 1422 ntBASIC16.13■□□□□ 0.17
NEK3P51956 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.13■□□□□ 0.17
NEK3P51956 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NEK3P51956 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC16.13■□□□□ 0.17
NEK3P51956 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC16.13■□□□□ 0.17
NEK3P51956 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC16.13■□□□□ 0.17
NEK3P51956 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
NEK3P51956 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NEK3P51956 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NEK3P51956 AC004987.2-201ENST00000395959 1148 ntBASIC16.13■□□□□ 0.17
NEK3P51956 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
NEK3P51956 FO393414.2-201ENST00000405153 598 ntBASIC16.13■□□□□ 0.17
NEK3P51956 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC16.13■□□□□ 0.17
NEK3P51956 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC16.13■□□□□ 0.17
NEK3P51956 SDHAP3-202ENST00000515467 728 ntBASIC16.13■□□□□ 0.17
NEK3P51956 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC16.13■□□□□ 0.17
NEK3P51956 COQ9-214ENST00000567933 882 ntTSL 3 BASIC16.13■□□□□ 0.17
NEK3P51956 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
NEK3P51956 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16.13■□□□□ 0.17
NEK3P51956 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
NEK3P51956 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
NEK3P51956 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
NEK3P51956 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NEK3P51956 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC16.13■□□□□ 0.17
NEK3P51956 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
NEK3P51956 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NEK3P51956 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
NEK3P51956 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
NEK3P51956 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
NEK3P51956 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NEK3P51956 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
NEK3P51956 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NEK3P51956 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
NEK3P51956 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NEK3P51956 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NEK3P51956 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NEK3P51956 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NEK3P51956 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
NEK3P51956 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NEK3P51956 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NEK3P51956 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NEK3P51956 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC16.12■□□□□ 0.17
NEK3P51956 FXR1-221ENST00000491674 365 ntTSL 2 BASIC16.12■□□□□ 0.17
NEK3P51956 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NEK3P51956 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC16.12■□□□□ 0.17
NEK3P51956 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC16.12■□□□□ 0.17
NEK3P51956 RNA5-8SN1-201ENST00000610460 153 ntBASIC16.12■□□□□ 0.17
NEK3P51956 RNA5-8SN5-202ENST00000612463 153 ntBASIC16.12■□□□□ 0.17
NEK3P51956 RNA5-8SN4-201ENST00000613359 153 ntBASIC16.12■□□□□ 0.17
NEK3P51956 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NEK3P51956 RNA5-8SN5-201ENST00000619471 153 ntBASIC16.12■□□□□ 0.17
NEK3P51956 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC16.12■□□□□ 0.17
NEK3P51956 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC16.12■□□□□ 0.17
NEK3P51956 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NEK3P51956 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NEK3P51956 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NEK3P51956 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
NEK3P51956 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
NEK3P51956 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC16.12■□□□□ 0.17
NEK3P51956 CICP4-201ENST00000447359 2812 ntBASIC16.12■□□□□ 0.17
NEK3P51956 AC104581.4-201ENST00000623126 3052 ntBASIC16.12■□□□□ 0.17
NEK3P51956 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC16.12■□□□□ 0.17
NEK3P51956 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
NEK3P51956 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NEK3P51956 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
NEK3P51956 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
NEK3P51956 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
NEK3P51956 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
NEK3P51956 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC16.11■□□□□ 0.17
NEK3P51956 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms