Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC16.54■□□□□ 0.24
LIG3P49916 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC16.54■□□□□ 0.24
LIG3P49916 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
LIG3P49916 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC16.54■□□□□ 0.24
LIG3P49916 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LIG3P49916 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC16.54■□□□□ 0.24
LIG3P49916 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIG3P49916 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIG3P49916 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIG3P49916 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIG3P49916 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIG3P49916 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.54■□□□□ 0.24
LIG3P49916 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
LIG3P49916 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
LIG3P49916 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIG3P49916 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIG3P49916 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC16.53■□□□□ 0.24
LIG3P49916 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIG3P49916 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC16.53■□□□□ 0.24
LIG3P49916 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC16.53■□□□□ 0.24
LIG3P49916 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC16.53■□□□□ 0.24
LIG3P49916 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIG3P49916 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIG3P49916 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.53■□□□□ 0.24
LIG3P49916 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIG3P49916 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIG3P49916 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
LIG3P49916 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIG3P49916 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.53■□□□□ 0.24
LIG3P49916 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC16.53■□□□□ 0.24
LIG3P49916 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIG3P49916 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC16.53■□□□□ 0.24
LIG3P49916 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIG3P49916 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIG3P49916 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.53■□□□□ 0.24
LIG3P49916 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC16.53■□□□□ 0.24
LIG3P49916 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC16.53■□□□□ 0.24
LIG3P49916 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.53■□□□□ 0.24
LIG3P49916 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIG3P49916 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC16.53■□□□□ 0.24
LIG3P49916 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LIG3P49916 SLC25A39P2-201ENST00000537614 270 ntBASIC16.53■□□□□ 0.24
LIG3P49916 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC16.53■□□□□ 0.24
LIG3P49916 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.53■□□□□ 0.24
LIG3P49916 AP000842.3-202ENST00000569238 1080 ntBASIC16.53■□□□□ 0.24
LIG3P49916 SSH2-211ENST00000590153 570 ntTSL 4 BASIC16.53■□□□□ 0.24
LIG3P49916 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC16.53■□□□□ 0.24
LIG3P49916 AC084121.4-201ENST00000641598 221 ntBASIC16.53■□□□□ 0.24
LIG3P49916 AF228730.8-201ENST00000642140 221 ntBASIC16.53■□□□□ 0.24
LIG3P49916 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC16.53■□□□□ 0.24
LIG3P49916 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC16.53■□□□□ 0.24
LIG3P49916 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
LIG3P49916 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIG3P49916 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIG3P49916 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIG3P49916 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
LIG3P49916 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LIG3P49916 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIG3P49916 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC16.53■□□□□ 0.24
LIG3P49916 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LIG3P49916 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIG3P49916 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIG3P49916 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIG3P49916 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIG3P49916 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIG3P49916 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIG3P49916 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC16.52■□□□□ 0.24
LIG3P49916 AL031731.1-201ENST00000642131 2094 ntBASIC16.52■□□□□ 0.24
LIG3P49916 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LIG3P49916 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC16.52■□□□□ 0.24
LIG3P49916 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIG3P49916 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.52■□□□□ 0.24
LIG3P49916 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LIG3P49916 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC16.52■□□□□ 0.24
LIG3P49916 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC16.52■□□□□ 0.24
LIG3P49916 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
LIG3P49916 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIG3P49916 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LIG3P49916 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.52■□□□□ 0.24
LIG3P49916 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIG3P49916 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIG3P49916 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LIG3P49916 MIR346-201ENST00000362234 95 ntBASIC16.52■□□□□ 0.24
LIG3P49916 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC16.52■□□□□ 0.24
LIG3P49916 AL645939.2-201ENST00000427340 991 ntBASIC16.52■□□□□ 0.24
LIG3P49916 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC16.52■□□□□ 0.24
LIG3P49916 HLA-J-202ENST00000469281 1241 ntBASIC16.52■□□□□ 0.24
LIG3P49916 PRYP6-201ENST00000514804 343 ntBASIC16.52■□□□□ 0.24
LIG3P49916 AC025678.2-201ENST00000562061 970 ntBASIC16.52■□□□□ 0.24
LIG3P49916 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.52■□□□□ 0.24
LIG3P49916 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
LIG3P49916 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.52■□□□□ 0.24
LIG3P49916 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
LIG3P49916 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
LIG3P49916 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC16.52■□□□□ 0.23
LIG3P49916 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
LIG3P49916 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.52■□□□□ 0.23
LIG3P49916 PCDHA3-202ENST00000532566 4594 ntBASIC16.52■□□□□ 0.23
LIG3P49916 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
LIG3P49916 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC16.52■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms