Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC12.11□□□□□ -0.47
HOXD3P31249 HIST1H2BPS3-201ENST00000419683 341 ntBASIC12.11□□□□□ -0.47
HOXD3P31249 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC12.11□□□□□ -0.47
HOXD3P31249 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC12.11□□□□□ -0.47
HOXD3P31249 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC12.11□□□□□ -0.47
HOXD3P31249 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXD3P31249 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC12.11□□□□□ -0.47
HOXD3P31249 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXD3P31249 AC104596.2-201ENST00000512793 793 ntBASIC12.11□□□□□ -0.47
HOXD3P31249 FUZ-207ENST00000526575 482 ntTSL 4 BASIC12.11□□□□□ -0.47
HOXD3P31249 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC12.11□□□□□ -0.47
HOXD3P31249 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC12.11□□□□□ -0.47
HOXD3P31249 AC106886.1-201ENST00000568660 600 ntBASIC12.11□□□□□ -0.47
HOXD3P31249 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC12.11□□□□□ -0.47
HOXD3P31249 AC099568.2-201ENST00000609194 695 ntBASIC12.11□□□□□ -0.47
HOXD3P31249 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC12.11□□□□□ -0.47
HOXD3P31249 AL033527.5-201ENST00000641382 801 ntBASIC12.11□□□□□ -0.47
HOXD3P31249 TK2-221ENST00000620035 5060 ntTSL 2 BASIC12.11□□□□□ -0.47
HOXD3P31249 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXD3P31249 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC12.11□□□□□ -0.47
HOXD3P31249 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HOXD3P31249 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HOXD3P31249 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXD3P31249 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC12.11□□□□□ -0.47
HOXD3P31249 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXD3P31249 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HOXD3P31249 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC12.11□□□□□ -0.47
HOXD3P31249 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC12.11□□□□□ -0.47
HOXD3P31249 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HOXD3P31249 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXD3P31249 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXD3P31249 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
HOXD3P31249 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXD3P31249 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HOXD3P31249 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXD3P31249 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC12.1□□□□□ -0.47
HOXD3P31249 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXD3P31249 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC12.1□□□□□ -0.47
HOXD3P31249 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
HOXD3P31249 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXD3P31249 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC12.1□□□□□ -0.47
HOXD3P31249 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXD3P31249 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
HOXD3P31249 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HOXD3P31249 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXD3P31249 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXD3P31249 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXD3P31249 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXD3P31249 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXD3P31249 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXD3P31249 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC12.1□□□□□ -0.47
HOXD3P31249 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HOXD3P31249 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC12.1□□□□□ -0.47
HOXD3P31249 AC007389.4-201ENST00000454674 793 ntBASIC12.1□□□□□ -0.47
HOXD3P31249 CROCCP4-201ENST00000457096 498 ntBASIC12.1□□□□□ -0.47
HOXD3P31249 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXD3P31249 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HOXD3P31249 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC12.1□□□□□ -0.47
HOXD3P31249 AC092552.1-201ENST00000547243 906 ntBASIC12.1□□□□□ -0.47
HOXD3P31249 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC12.1□□□□□ -0.47
HOXD3P31249 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC12.1□□□□□ -0.47
HOXD3P31249 MIR4313-201ENST00000580760 101 ntBASIC12.1□□□□□ -0.47
HOXD3P31249 MIR4259-201ENST00000584466 101 ntBASIC12.1□□□□□ -0.47
HOXD3P31249 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
HOXD3P31249 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC12.1□□□□□ -0.47
HOXD3P31249 AC133552.6-201ENST00000613406 534 ntBASIC12.1□□□□□ -0.47
HOXD3P31249 MIR8072-201ENST00000614241 80 ntBASIC12.1□□□□□ -0.47
HOXD3P31249 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC12.1□□□□□ -0.47
HOXD3P31249 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
HOXD3P31249 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXD3P31249 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC12.1□□□□□ -0.47
HOXD3P31249 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC12.1□□□□□ -0.47
HOXD3P31249 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC12.1□□□□□ -0.47
HOXD3P31249 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
HOXD3P31249 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HOXD3P31249 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXD3P31249 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HOXD3P31249 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
HOXD3P31249 DEK-201ENST00000244776 1441 ntTSL 2 BASIC12.1□□□□□ -0.47
HOXD3P31249 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC12.1□□□□□ -0.47
HOXD3P31249 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC12.1□□□□□ -0.47
HOXD3P31249 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXD3P31249 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC12.1□□□□□ -0.47
HOXD3P31249 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXD3P31249 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXD3P31249 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HOXD3P31249 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXD3P31249 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXD3P31249 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXD3P31249 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC12.09□□□□□ -0.47
HOXD3P31249 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXD3P31249 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXD3P31249 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC12.09□□□□□ -0.47
HOXD3P31249 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC12.09□□□□□ -0.47
HOXD3P31249 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXD3P31249 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXD3P31249 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HOXD3P31249 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXD3P31249 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC12.09□□□□□ -0.47
HOXD3P31249 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms