Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB1P09429 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB1P09429 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB1P09429 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB1P09429 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB1P09429 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB1P09429 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
HMGB1P09429 PMS2P2-201ENST00000425039 1128 ntBASIC18.4■□□□□ 0.54
HMGB1P09429 AL512638.1-201ENST00000457493 794 ntBASIC18.4■□□□□ 0.54
HMGB1P09429 AC025181.2-201ENST00000606994 802 ntBASIC18.4■□□□□ 0.54
HMGB1P09429 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB1P09429 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB1P09429 MYB-201ENST00000316528 3571 ntTSL 5 BASIC18.4■□□□□ 0.54
HMGB1P09429 MYB-241ENST00000616088 3573 ntTSL 5 BASIC18.4■□□□□ 0.54
HMGB1P09429 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC18.4■□□□□ 0.54
HMGB1P09429 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC18.4■□□□□ 0.54
HMGB1P09429 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC18.4■□□□□ 0.54
HMGB1P09429 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB1P09429 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB1P09429 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC18.4■□□□□ 0.54
HMGB1P09429 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
HMGB1P09429 CELP-203ENST00000624767 2414 ntTSL 5 BASIC18.4■□□□□ 0.54
HMGB1P09429 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
HMGB1P09429 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB1P09429 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB1P09429 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
HMGB1P09429 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
HMGB1P09429 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC18.39■□□□□ 0.54
HMGB1P09429 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
HMGB1P09429 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC18.39■□□□□ 0.54
HMGB1P09429 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.54
HMGB1P09429 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC18.39■□□□□ 0.54
HMGB1P09429 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC18.39■□□□□ 0.54
HMGB1P09429 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
HMGB1P09429 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
HMGB1P09429 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC18.39■□□□□ 0.53
HMGB1P09429 MYB-242ENST00000618728 3545 ntTSL 5 BASIC18.39■□□□□ 0.53
HMGB1P09429 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB1P09429 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
HMGB1P09429 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB1P09429 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB1P09429 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC18.39■□□□□ 0.53
HMGB1P09429 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB1P09429 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC18.39■□□□□ 0.53
HMGB1P09429 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC18.39■□□□□ 0.53
HMGB1P09429 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC18.39■□□□□ 0.53
HMGB1P09429 AC135586.1-201ENST00000539323 574 ntBASIC18.39■□□□□ 0.53
HMGB1P09429 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC18.39■□□□□ 0.53
HMGB1P09429 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
HMGB1P09429 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC18.39■□□□□ 0.53
HMGB1P09429 AL390955.2-201ENST00000603032 514 ntBASIC18.39■□□□□ 0.53
HMGB1P09429 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC18.39■□□□□ 0.53
HMGB1P09429 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB1P09429 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB1P09429 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC18.39■□□□□ 0.53
HMGB1P09429 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB1P09429 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB1P09429 WASH3P-207ENST00000560956 1394 ntBASIC18.39■□□□□ 0.53
HMGB1P09429 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB1P09429 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB1P09429 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
HMGB1P09429 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB1P09429 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
HMGB1P09429 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB1P09429 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB1P09429 POLL-217ENST00000628479 1953 ntTSL 5 BASIC18.39■□□□□ 0.53
HMGB1P09429 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB1P09429 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB1P09429 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB1P09429 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB1P09429 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC18.39■□□□□ 0.53
HMGB1P09429 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB1P09429 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
HMGB1P09429 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB1P09429 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB1P09429 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC18.38■□□□□ 0.53
HMGB1P09429 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
HMGB1P09429 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB1P09429 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB1P09429 MECR-202ENST00000373791 2416 ntTSL 2 BASIC18.38■□□□□ 0.53
HMGB1P09429 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB1P09429 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC18.38■□□□□ 0.53
HMGB1P09429 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC18.38■□□□□ 0.53
HMGB1P09429 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC18.38■□□□□ 0.53
HMGB1P09429 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC18.38■□□□□ 0.53
HMGB1P09429 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC18.38■□□□□ 0.53
HMGB1P09429 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB1P09429 DUT-210ENST00000559935 569 ntTSL 3 BASIC18.38■□□□□ 0.53
HMGB1P09429 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB1P09429 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC18.38■□□□□ 0.53
HMGB1P09429 SRD5A3P1-201ENST00000603021 949 ntBASIC18.38■□□□□ 0.53
HMGB1P09429 AC008738.7-201ENST00000609744 511 ntBASIC18.38■□□□□ 0.53
HMGB1P09429 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC18.38■□□□□ 0.53
HMGB1P09429 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC18.38■□□□□ 0.53
HMGB1P09429 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB1P09429 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
HMGB1P09429 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB1P09429 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC18.38■□□□□ 0.53
HMGB1P09429 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB1P09429 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms