Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC19.28■□□□□ 0.68
CACNA1FO60840 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
CACNA1FO60840 RN7SL48P-201ENST00000579283 293 ntBASIC19.28■□□□□ 0.68
CACNA1FO60840 MIR4259-201ENST00000584466 101 ntBASIC19.28■□□□□ 0.68
CACNA1FO60840 ZACNP1-201ENST00000612259 710 ntBASIC19.28■□□□□ 0.68
CACNA1FO60840 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CACNA1FO60840 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CACNA1FO60840 AC023157.3-201ENST00000619086 2088 ntBASIC19.28■□□□□ 0.68
CACNA1FO60840 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CACNA1FO60840 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CACNA1FO60840 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC19.28■□□□□ 0.68
CACNA1FO60840 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC19.28■□□□□ 0.68
CACNA1FO60840 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CACNA1FO60840 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CACNA1FO60840 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CACNA1FO60840 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC19.28■□□□□ 0.68
CACNA1FO60840 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC19.28■□□□□ 0.68
CACNA1FO60840 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
CACNA1FO60840 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CACNA1FO60840 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CACNA1FO60840 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CACNA1FO60840 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC19.28■□□□□ 0.68
CACNA1FO60840 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CACNA1FO60840 RGS5-214ENST00000429865 754 ntTSL 3 BASIC19.28■□□□□ 0.68
CACNA1FO60840 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC19.28■□□□□ 0.68
CACNA1FO60840 RNA5SP412-201ENST00000516234 123 ntBASIC19.28■□□□□ 0.68
CACNA1FO60840 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC19.28■□□□□ 0.68
CACNA1FO60840 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CACNA1FO60840 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC19.28■□□□□ 0.68
CACNA1FO60840 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC19.28■□□□□ 0.68
CACNA1FO60840 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CACNA1FO60840 PARN-202ENST00000420015 2360 ntTSL 2 BASIC19.28■□□□□ 0.68
CACNA1FO60840 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CACNA1FO60840 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CACNA1FO60840 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CACNA1FO60840 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CACNA1FO60840 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CACNA1FO60840 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CACNA1FO60840 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CACNA1FO60840 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CACNA1FO60840 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CACNA1FO60840 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CACNA1FO60840 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.27■□□□□ 0.68
CACNA1FO60840 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CACNA1FO60840 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC19.27■□□□□ 0.68
CACNA1FO60840 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC19.27■□□□□ 0.68
CACNA1FO60840 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC19.27■□□□□ 0.68
CACNA1FO60840 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
CACNA1FO60840 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CACNA1FO60840 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC19.27■□□□□ 0.68
CACNA1FO60840 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CACNA1FO60840 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC19.27■□□□□ 0.68
CACNA1FO60840 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CACNA1FO60840 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC19.27■□□□□ 0.68
CACNA1FO60840 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
CACNA1FO60840 AC026954.1-201ENST00000429771 1293 ntBASIC19.27■□□□□ 0.68
CACNA1FO60840 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC19.27■□□□□ 0.68
CACNA1FO60840 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC19.27■□□□□ 0.68
CACNA1FO60840 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
CACNA1FO60840 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
CACNA1FO60840 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CACNA1FO60840 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC19.27■□□□□ 0.68
CACNA1FO60840 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CACNA1FO60840 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC19.27■□□□□ 0.68
CACNA1FO60840 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CACNA1FO60840 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC19.27■□□□□ 0.68
CACNA1FO60840 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CACNA1FO60840 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CACNA1FO60840 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CACNA1FO60840 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CACNA1FO60840 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC19.27■□□□□ 0.67
CACNA1FO60840 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CACNA1FO60840 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CACNA1FO60840 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CACNA1FO60840 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.27■□□□□ 0.67
CACNA1FO60840 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CACNA1FO60840 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC19.27■□□□□ 0.67
CACNA1FO60840 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CACNA1FO60840 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CACNA1FO60840 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CACNA1FO60840 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC19.26■□□□□ 0.67
CACNA1FO60840 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CACNA1FO60840 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CACNA1FO60840 FTLP10-202ENST00000505798 471 ntBASIC19.26■□□□□ 0.67
CACNA1FO60840 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC19.26■□□□□ 0.67
CACNA1FO60840 RN7SL560P-201ENST00000577943 264 ntBASIC19.26■□□□□ 0.67
CACNA1FO60840 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC19.26■□□□□ 0.67
CACNA1FO60840 HTR7P1-202ENST00000624664 4411 ntBASIC19.26■□□□□ 0.67
CACNA1FO60840 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CACNA1FO60840 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CACNA1FO60840 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CACNA1FO60840 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
CACNA1FO60840 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CACNA1FO60840 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC19.26■□□□□ 0.67
CACNA1FO60840 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CACNA1FO60840 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CACNA1FO60840 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC19.26■□□□□ 0.67
CACNA1FO60840 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CACNA1FO60840 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC19.26■□□□□ 0.67
CACNA1FO60840 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms