Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 TK1-203ENST00000588734 1681 ntTSL 2 BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ATG4BQ9Y4P1 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 BANP-201ENST00000286122 2368 ntTSL 5 BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 AL589987.1-201ENST00000453380 819 ntBASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 MIR4745-201ENST00000577608 62 ntBASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 AC084364.1-201ENST00000551967 1556 ntBASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 AC068587.6-202ENST00000641839 5619 ntBASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 AL109954.1-202ENST00000564051 2148 ntBASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
ATG4BQ9Y4P1 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 UGT1A2P-201ENST00000454886 866 ntBASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 AC015910.1-201ENST00000579400 975 ntBASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 SRD5A3P1-201ENST00000603021 949 ntBASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 LINC02084-201ENST00000606069 1096 ntBASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 DBET-201ENST00000630918 3363 ntBASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms