Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 AC124283.3-201ENST00000570869 594 ntBASIC18.9■□□□□ 0.62
RPAP1Q9BWH6 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC18.9■□□□□ 0.62
RPAP1Q9BWH6 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
RPAP1Q9BWH6 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC18.9■□□□□ 0.62
RPAP1Q9BWH6 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RPAP1Q9BWH6 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC18.9■□□□□ 0.62
RPAP1Q9BWH6 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
RPAP1Q9BWH6 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC18.9■□□□□ 0.62
RPAP1Q9BWH6 AL607033.1-201ENST00000623900 1599 ntBASIC18.89■□□□□ 0.62
RPAP1Q9BWH6 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
RPAP1Q9BWH6 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 CMC2-214ENST00000565925 640 ntTSL 5 BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 WNT11-204ENST00000621122 789 ntTSL 5 BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RPAP1Q9BWH6 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 AC006058.4-201ENST00000624016 1670 ntBASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 FAM86LP-201ENST00000478302 853 ntBASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 MFF-223ENST00000524634 647 ntTSL 2 BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 CU634019.7-201ENST00000624153 1185 ntBASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 FP236241.2-201ENST00000624906 1185 ntBASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC18.88■□□□□ 0.61
RPAP1Q9BWH6 KRT8P22-201ENST00000562317 1415 ntBASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 AC006486.2-201ENST00000624246 2199 ntBASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 AC023157.3-201ENST00000619086 2088 ntBASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms