Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 HECTD2-201ENST00000298068 4802 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AL583810.1-201ENST00000553344 1045 ntBASIC4.87□□□□□ -1.63
SYNE1Q8NF91 MAX-210ENST00000555419 765 ntTSL 5 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AC018665.1-201ENST00000622927 1362 ntBASIC4.87□□□□□ -1.63
SYNE1Q8NF91 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 RNA5SP423-201ENST00000517127 109 ntBASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AC093726.1-201ENST00000608064 963 ntBASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 PAX8-203ENST00000348715 3966 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 PPP1R26P5-201ENST00000416640 3664 ntBASIC4.87□□□□□ -1.63
SYNE1Q8NF91 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 BCRP2-202ENST00000447763 634 ntBASIC4.87□□□□□ -1.63
SYNE1Q8NF91 RHOA-206ENST00000454011 889 ntTSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 BCRP6-201ENST00000510112 632 ntBASIC4.87□□□□□ -1.63
SYNE1Q8NF91 BCRP7-201ENST00000511549 544 ntBASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AC124947.2-201ENST00000547118 1133 ntBASIC4.87□□□□□ -1.63
SYNE1Q8NF91 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 BTNL10-201ENST00000595971 695 ntBASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AC078925.2-201ENST00000624013 1973 ntBASIC4.87□□□□□ -1.63
SYNE1Q8NF91 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms