Protein–RNA interactions for Protein: Q8N9L1

ZIC4, Zinc finger protein ZIC 4, humanhuman

Predictions only

Length 334 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC4Q8N9L1 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC13.79□□□□□ -0.2
ZIC4Q8N9L1 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
ZIC4Q8N9L1 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 AC103702.1-201ENST00000548801 2630 ntBASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 AL109954.1-202ENST00000564051 2148 ntBASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 NFIC-211ENST00000641145 8399 ntBASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 METTL26-204ENST00000397665 558 ntTSL 2 BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 CRB3P1-201ENST00000449338 276 ntBASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 PFN2-205ENST00000461868 613 ntTSL 2 BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 SPDYE22P-201ENST00000582158 798 ntBASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 AC138035.3-201ENST00000622706 2791 ntBASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 DRD5P1-201ENST00000456605 1438 ntBASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 AC104640.1-201ENST00000562617 2109 ntBASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 STRN-202ENST00000379213 2254 ntTSL 5 BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ZIC4Q8N9L1 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC13.77□□□□□ -0.2
ZIC4Q8N9L1 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.2
ZIC4Q8N9L1 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC13.77□□□□□ -0.2
ZIC4Q8N9L1 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
ZIC4Q8N9L1 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
ZIC4Q8N9L1 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.2
ZIC4Q8N9L1 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
ZIC4Q8N9L1 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.2
ZIC4Q8N9L1 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
ZIC4Q8N9L1 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 CALY-203ENST00000368558 825 ntTSL 5 BASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 CICP11-201ENST00000434745 2827 ntBASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 MYCLP2-201ENST00000449268 967 ntBASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 ELK1P1-201ENST00000485699 580 ntBASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 AC026410.3-201ENST00000514280 936 ntBASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 AC092552.1-201ENST00000547243 906 ntBASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 TP53TG3HP-202ENST00000569755 579 ntBASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 AC126365.1-201ENST00000578585 1514 ntBASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
ZIC4Q8N9L1 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms