Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC15.15■□□□□ 0.02
FOXA1P55317 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC15.15■□□□□ 0.02
FOXA1P55317 AC007967.4-201ENST00000614700 386 ntBASIC15.15■□□□□ 0.02
FOXA1P55317 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA1P55317 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
FOXA1P55317 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC15.15■□□□□ 0.02
FOXA1P55317 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC15.15■□□□□ 0.02
FOXA1P55317 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA1P55317 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA1P55317 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA1P55317 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA1P55317 USP28-214ENST00000545540 3431 ntTSL 2 BASIC15.15■□□□□ 0.02
FOXA1P55317 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
FOXA1P55317 AC007292.2-201ENST00000593524 1812 ntBASIC15.15■□□□□ 0.02
FOXA1P55317 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
FOXA1P55317 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC15.15■□□□□ 0.02
FOXA1P55317 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC15.15■□□□□ 0.02
FOXA1P55317 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
FOXA1P55317 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC15.14■□□□□ 0.01
FOXA1P55317 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
FOXA1P55317 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA1P55317 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
FOXA1P55317 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA1P55317 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA1P55317 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA1P55317 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC15.14■□□□□ 0.01
FOXA1P55317 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA1P55317 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA1P55317 KRT8P12-202ENST00000472924 1397 ntBASIC15.14■□□□□ 0.01
FOXA1P55317 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC15.14■□□□□ 0.01
FOXA1P55317 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA1P55317 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA1P55317 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA1P55317 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15.14■□□□□ 0.01
FOXA1P55317 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC15.14■□□□□ 0.01
FOXA1P55317 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC15.14■□□□□ 0.01
FOXA1P55317 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC15.14■□□□□ 0.01
FOXA1P55317 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC15.14■□□□□ 0.01
FOXA1P55317 MTND6P24-201ENST00000440466 518 ntBASIC15.14■□□□□ 0.01
FOXA1P55317 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC15.14■□□□□ 0.01
FOXA1P55317 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA1P55317 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC15.14■□□□□ 0.01
FOXA1P55317 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC15.14■□□□□ 0.01
FOXA1P55317 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.14■□□□□ 0.01
FOXA1P55317 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC15.14■□□□□ 0.01
FOXA1P55317 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.14■□□□□ 0.01
FOXA1P55317 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA1P55317 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
FOXA1P55317 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.14■□□□□ 0.01
FOXA1P55317 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
FOXA1P55317 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA1P55317 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA1P55317 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC15.14■□□□□ 0.01
FOXA1P55317 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC15.14■□□□□ 0.01
FOXA1P55317 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.14■□□□□ 0.01
FOXA1P55317 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA1P55317 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC15.14■□□□□ 0.01
FOXA1P55317 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC15.14■□□□□ 0.01
FOXA1P55317 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA1P55317 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA1P55317 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA1P55317 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC15.14■□□□□ 0.01
FOXA1P55317 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA1P55317 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.01
FOXA1P55317 AC232323.1-201ENST00000540724 2099 ntBASIC15.13■□□□□ 0.01
FOXA1P55317 REXO1L5P-201ENST00000622260 2098 ntBASIC15.13■□□□□ 0.01
FOXA1P55317 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC15.13■□□□□ 0.01
FOXA1P55317 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
FOXA1P55317 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA1P55317 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC15.13■□□□□ 0.01
FOXA1P55317 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA1P55317 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.13■□□□□ 0.01
FOXA1P55317 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC15.13■□□□□ 0.01
FOXA1P55317 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA1P55317 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
FOXA1P55317 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA1P55317 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA1P55317 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA1P55317 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA1P55317 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA1P55317 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC15.13■□□□□ 0.01
FOXA1P55317 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
FOXA1P55317 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA1P55317 CCND1-203ENST00000536559 553 ntTSL 3 BASIC15.13■□□□□ 0.01
FOXA1P55317 MIR4453-201ENST00000584019 89 ntBASIC15.13■□□□□ 0.01
FOXA1P55317 AC010327.4-202ENST00000591484 748 ntBASIC15.13■□□□□ 0.01
FOXA1P55317 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC15.13■□□□□ 0.01
FOXA1P55317 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
FOXA1P55317 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
FOXA1P55317 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC15.13■□□□□ 0.01
FOXA1P55317 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC15.13■□□□□ 0.01
FOXA1P55317 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC15.13■□□□□ 0.01
FOXA1P55317 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC15.13■□□□□ 0.01
FOXA1P55317 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA1P55317 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA1P55317 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
FOXA1P55317 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC15.13■□□□□ 0.01
FOXA1P55317 ACE3P-201ENST00000423435 1973 ntBASIC15.13■□□□□ 0.01
FOXA1P55317 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC15.12■□□□□ 0.01
FOXA1P55317 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms