Protein–RNA interactions for Protein: P20036

HLA-DPA1, HLA class II histocompatibility antigen, DP alpha 1 chain, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1P20036 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HLA-DPA1P20036 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 AL133267.1-201ENST00000398220 340 ntBASIC15.8■□□□□ 0.12
HLA-DPA1P20036 RPL5P21-201ENST00000404620 815 ntBASIC15.8■□□□□ 0.12
HLA-DPA1P20036 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 KRT18P64-201ENST00000434946 1219 ntBASIC15.8■□□□□ 0.12
HLA-DPA1P20036 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 PRR29-204ENST00000577953 565 ntTSL 4 BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 AC015910.1-201ENST00000579400 975 ntBASIC15.8■□□□□ 0.12
HLA-DPA1P20036 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 AF228730.6-201ENST00000641497 218 ntBASIC15.8■□□□□ 0.12
HLA-DPA1P20036 AC084121.3-201ENST00000641716 218 ntBASIC15.8■□□□□ 0.12
HLA-DPA1P20036 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
HLA-DPA1P20036 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 AC022144.1-201ENST00000602255 1580 ntBASIC15.79■□□□□ 0.12
HLA-DPA1P20036 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 AL512638.1-201ENST00000457493 794 ntBASIC15.79■□□□□ 0.12
HLA-DPA1P20036 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 RAB35-202ENST00000534951 939 ntTSL 2 BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 DUT-210ENST00000559935 569 ntTSL 3 BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 AC092337.1-201ENST00000568699 1129 ntBASIC15.79■□□□□ 0.12
HLA-DPA1P20036 AC009407.1-201ENST00000568958 598 ntBASIC15.79■□□□□ 0.12
HLA-DPA1P20036 AC005498.2-205ENST00000593218 784 ntBASIC15.79■□□□□ 0.12
HLA-DPA1P20036 AC004461.2-201ENST00000629517 803 ntBASIC15.79■□□□□ 0.12
HLA-DPA1P20036 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HLA-DPA1P20036 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms