Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AL353770.1-201ENST00000614915 403 ntBASIC17.06■□□□□ 0.32
COL6A1P12109 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
COL6A1P12109 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A1P12109 AC006449.6-201ENST00000612330 2296 ntBASIC17.06■□□□□ 0.32
COL6A1P12109 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A1P12109 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A1P12109 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A1P12109 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A1P12109 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A1P12109 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC17.06■□□□□ 0.32
COL6A1P12109 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
COL6A1P12109 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A1P12109 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A1P12109 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
COL6A1P12109 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A1P12109 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A1P12109 AC011477.6-201ENST00000604980 1927 ntBASIC17.06■□□□□ 0.32
COL6A1P12109 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC17.05■□□□□ 0.32
COL6A1P12109 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A1P12109 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.05■□□□□ 0.32
COL6A1P12109 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A1P12109 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.32
COL6A1P12109 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A1P12109 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.05■□□□□ 0.32
COL6A1P12109 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A1P12109 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
COL6A1P12109 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.05■□□□□ 0.32
COL6A1P12109 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A1P12109 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.05■□□□□ 0.32
COL6A1P12109 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A1P12109 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A1P12109 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A1P12109 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A1P12109 NPPA-201ENST00000376476 728 ntTSL 3 BASIC17.05■□□□□ 0.32
COL6A1P12109 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A1P12109 POM121L8P-201ENST00000417732 1281 ntBASIC17.05■□□□□ 0.32
COL6A1P12109 CMC1-204ENST00000423894 549 ntTSL 2 BASIC17.05■□□□□ 0.32
COL6A1P12109 POM121L9P-203ENST00000441984 1285 ntBASIC17.05■□□□□ 0.32
COL6A1P12109 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC17.05■□□□□ 0.32
COL6A1P12109 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A1P12109 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC17.05■□□□□ 0.32
COL6A1P12109 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A1P12109 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC17.05■□□□□ 0.32
COL6A1P12109 CSH2-206ENST00000560142 749 ntTSL 5 BASIC17.05■□□□□ 0.32
COL6A1P12109 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC17.05■□□□□ 0.32
COL6A1P12109 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC17.05■□□□□ 0.32
COL6A1P12109 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A1P12109 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
COL6A1P12109 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A1P12109 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A1P12109 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
COL6A1P12109 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A1P12109 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A1P12109 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A1P12109 LRRC59-203ENST00000576448 1531 ntBASIC17.05■□□□□ 0.32
COL6A1P12109 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC17.05■□□□□ 0.32
COL6A1P12109 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.05■□□□□ 0.32
COL6A1P12109 KRT8P4-201ENST00000509735 1454 ntBASIC17.05■□□□□ 0.32
COL6A1P12109 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A1P12109 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.05■□□□□ 0.32
COL6A1P12109 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
COL6A1P12109 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.04■□□□□ 0.32
COL6A1P12109 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A1P12109 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.04■□□□□ 0.32
COL6A1P12109 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A1P12109 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
COL6A1P12109 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC17.04■□□□□ 0.32
COL6A1P12109 LRRFIP1P1-201ENST00000498774 2246 ntBASIC17.04■□□□□ 0.32
COL6A1P12109 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A1P12109 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A1P12109 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC17.04■□□□□ 0.32
COL6A1P12109 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A1P12109 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A1P12109 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A1P12109 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A1P12109 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC17.04■□□□□ 0.32
COL6A1P12109 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC17.04■□□□□ 0.32
COL6A1P12109 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC17.04■□□□□ 0.32
COL6A1P12109 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC17.04■□□□□ 0.32
COL6A1P12109 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC17.04■□□□□ 0.32
COL6A1P12109 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC17.04■□□□□ 0.32
COL6A1P12109 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A1P12109 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC17.04■□□□□ 0.32
COL6A1P12109 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A1P12109 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC17.04■□□□□ 0.32
COL6A1P12109 AL805961.1-203ENST00000641078 1258 ntBASIC17.04■□□□□ 0.32
COL6A1P12109 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A1P12109 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A1P12109 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.04■□□□□ 0.32
COL6A1P12109 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A1P12109 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A1P12109 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
COL6A1P12109 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A1P12109 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
COL6A1P12109 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.04■□□□□ 0.32
COL6A1P12109 AC005052.1-201ENST00000625181 2492 ntBASIC17.04■□□□□ 0.32
COL6A1P12109 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A1P12109 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC17.04■□□□□ 0.32
COL6A1P12109 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A1P12109 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms