Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 AC111152.3-201ENST00000569699 673 ntBASIC9.71□□□□□ -0.86
LINC00643Q86TS7 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 TBC1D8B-202ENST00000310452 2589 ntTSL 1 (best) BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 ACE3P-201ENST00000423435 1973 ntBASIC9.71□□□□□ -0.86
LINC00643Q86TS7 RBM15-202ENST00000487146 3316 ntTSL 1 (best) BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 DYSF-208ENST00000410020 6657 ntAPPRIS ALT2 TSL 1 (best) BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 MEP1A-201ENST00000230588 2892 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 ACSM2B-201ENST00000329697 2935 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 ARHGEF10L-202ENST00000361221 4488 ntAPPRIS P3 TSL 1 (best) BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 RNGTT-202ENST00000369485 4553 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 GALC-201ENST00000261304 3883 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 EIF3C-201ENST00000331666 3145 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 ZCCHC14-201ENST00000268616 7102 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 AC021752.1-202ENST00000613161 2398 ntTSL 2 BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 DCAF6-201ENST00000312263 3186 ntAPPRIS ALT2 TSL 1 (best) BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 RBM47-201ENST00000295971 4056 ntAPPRIS ALT1 TSL 5 BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 PLCB3-201ENST00000279230 4197 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 FAM187A-201ENST00000331733 3397 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 CCDC103-204ENST00000417826 3397 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 POLG-202ENST00000442287 4487 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 AKAP13-202ENST00000394510 9128 ntAPPRIS ALT2 TSL 5 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 FN1-201ENST00000323926 8708 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 MAN2C1-242ENST00000569482 3177 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 GPR173-201ENST00000332582 4485 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 SERBP1-204ENST00000370995 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 SLC26A6-202ENST00000337000 2317 ntTSL 2 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 FOXN3-219ENST00000615335 2421 ntAPPRIS P3 TSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 FAM207BP-201ENST00000447172 505 ntBASIC9.7□□□□□ -0.86
LINC00643Q86TS7 NME6-213ENST00000451657 871 ntTSL 2 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 PON3-205ENST00000451904 1053 ntTSL 3 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 AC091305.1-201ENST00000479476 895 ntBASIC9.7□□□□□ -0.86
LINC00643Q86TS7 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 AC011298.2-201ENST00000617989 482 ntBASIC9.7□□□□□ -0.86
LINC00643Q86TS7 VPS72-207ENST00000640458 689 ntTSL 5 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 INCENP-202ENST00000394818 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 DGKA-202ENST00000394147 2770 ntAPPRIS P1 TSL 5 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 SRD5A1-201ENST00000274192 7132 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 INHBA-201ENST00000242208 6064 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 TRAF6-202ENST00000526995 4627 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 NEDD4L-208ENST00000456173 4978 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 AC055811.4-201ENST00000624039 1754 ntBASIC9.7□□□□□ -0.86
LINC00643Q86TS7 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 DMBT1-201ENST00000330163 5802 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 DMBT1-206ENST00000368956 5802 ntTSL 5 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 PTK2-202ENST00000395218 4415 ntTSL 5 BASIC9.7□□□□□ -0.86
LINC00643Q86TS7 SFTPA1-202ENST00000419470 2210 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms