Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
KRT28Q7Z3Y7 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
KRT28Q7Z3Y7 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
KRT28Q7Z3Y7 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
KRT28Q7Z3Y7 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
KRT28Q7Z3Y7 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
KRT28Q7Z3Y7 SP100-205ENST00000409824 1802 ntTSL 5 BASIC20.81■□□□□ 0.92
KRT28Q7Z3Y7 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC20.81■□□□□ 0.92
KRT28Q7Z3Y7 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 AL355334.1-201ENST00000417713 215 ntBASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 GHSR-202ENST00000427970 912 ntBASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 AC006335.1-201ENST00000445200 547 ntBASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 AC125604.1-201ENST00000496255 707 ntBASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 SAMD11P1-201ENST00000571429 661 ntBASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 AC124067.4-201ENST00000519691 2379 ntBASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
KRT28Q7Z3Y7 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 AC011676.5-201ENST00000624864 2660 ntBASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 AC055811.4-201ENST00000624039 1754 ntBASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
KRT28Q7Z3Y7 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 PDIA3P2-201ENST00000428073 158 ntBASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 PUDPP3-201ENST00000445368 636 ntBASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 FGFR3P1-201ENST00000449999 601 ntBASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 AC012044.1-201ENST00000603431 297 ntBASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 AC090164.2-201ENST00000611487 516 ntBASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 AC011491.1-203ENST00000637688 543 ntBASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT28Q7Z3Y7 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms