Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
KRT39Q6A163 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC16.9■□□□□ 0.3
KRT39Q6A163 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
KRT39Q6A163 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
KRT39Q6A163 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
KRT39Q6A163 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.9■□□□□ 0.3
KRT39Q6A163 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
KRT39Q6A163 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC16.9■□□□□ 0.3
KRT39Q6A163 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
KRT39Q6A163 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC16.9■□□□□ 0.3
KRT39Q6A163 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
KRT39Q6A163 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
KRT39Q6A163 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
KRT39Q6A163 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.3
KRT39Q6A163 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
KRT39Q6A163 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
KRT39Q6A163 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
KRT39Q6A163 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
KRT39Q6A163 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
KRT39Q6A163 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC16.89■□□□□ 0.29
KRT39Q6A163 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
KRT39Q6A163 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
KRT39Q6A163 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
KRT39Q6A163 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
KRT39Q6A163 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
KRT39Q6A163 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
KRT39Q6A163 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
KRT39Q6A163 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
KRT39Q6A163 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
KRT39Q6A163 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC16.89■□□□□ 0.29
KRT39Q6A163 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
KRT39Q6A163 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC16.89■□□□□ 0.29
KRT39Q6A163 RASL12-203ENST00000434605 982 ntTSL 2 BASIC16.89■□□□□ 0.29
KRT39Q6A163 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.89■□□□□ 0.29
KRT39Q6A163 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC16.89■□□□□ 0.29
KRT39Q6A163 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
KRT39Q6A163 SPDYE18-201ENST00000510091 1050 ntBASIC16.89■□□□□ 0.29
KRT39Q6A163 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC16.89■□□□□ 0.29
KRT39Q6A163 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.89■□□□□ 0.29
KRT39Q6A163 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
KRT39Q6A163 SRD5A3P1-201ENST00000603021 949 ntBASIC16.89■□□□□ 0.29
KRT39Q6A163 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
KRT39Q6A163 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC16.89■□□□□ 0.29
KRT39Q6A163 MFF-204ENST00000353339 2186 ntTSL 5 BASIC16.89■□□□□ 0.29
KRT39Q6A163 AC006486.2-201ENST00000624246 2199 ntBASIC16.89■□□□□ 0.29
KRT39Q6A163 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.29
KRT39Q6A163 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
KRT39Q6A163 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
KRT39Q6A163 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC16.89■□□□□ 0.29
KRT39Q6A163 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
KRT39Q6A163 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
KRT39Q6A163 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.89■□□□□ 0.29
KRT39Q6A163 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
KRT39Q6A163 KRT8P44-201ENST00000441609 1350 ntBASIC16.89■□□□□ 0.29
KRT39Q6A163 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
KRT39Q6A163 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
KRT39Q6A163 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
KRT39Q6A163 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC16.88■□□□□ 0.29
KRT39Q6A163 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
KRT39Q6A163 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
KRT39Q6A163 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
KRT39Q6A163 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.88■□□□□ 0.29
KRT39Q6A163 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
KRT39Q6A163 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
KRT39Q6A163 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
KRT39Q6A163 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
KRT39Q6A163 AC126365.1-201ENST00000578585 1514 ntBASIC16.88■□□□□ 0.29
KRT39Q6A163 PKIG-203ENST00000372887 769 ntTSL 3 BASIC16.88■□□□□ 0.29
KRT39Q6A163 MIR770-201ENST00000390219 98 ntBASIC16.88■□□□□ 0.29
KRT39Q6A163 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC16.88■□□□□ 0.29
KRT39Q6A163 MEIS3P1-201ENST00000495167 958 ntBASIC16.88■□□□□ 0.29
KRT39Q6A163 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC16.88■□□□□ 0.29
KRT39Q6A163 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC16.88■□□□□ 0.29
KRT39Q6A163 UBL5-208ENST00000593087 320 ntTSL 3 BASIC16.88■□□□□ 0.29
KRT39Q6A163 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
KRT39Q6A163 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
KRT39Q6A163 AC023157.3-201ENST00000619086 2088 ntBASIC16.88■□□□□ 0.29
KRT39Q6A163 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
KRT39Q6A163 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
KRT39Q6A163 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
KRT39Q6A163 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
KRT39Q6A163 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
KRT39Q6A163 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.88■□□□□ 0.29
KRT39Q6A163 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
KRT39Q6A163 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
KRT39Q6A163 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
KRT39Q6A163 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
KRT39Q6A163 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC16.88■□□□□ 0.29
KRT39Q6A163 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
KRT39Q6A163 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC16.88■□□□□ 0.29
KRT39Q6A163 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
KRT39Q6A163 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC16.88■□□□□ 0.29
KRT39Q6A163 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
KRT39Q6A163 STRN-202ENST00000379213 2254 ntTSL 5 BASIC16.87■□□□□ 0.29
KRT39Q6A163 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
KRT39Q6A163 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC16.87■□□□□ 0.29
KRT39Q6A163 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
KRT39Q6A163 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
KRT39Q6A163 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
KRT39Q6A163 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms