Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 AC084018.2-201ENST00000613093 2607 ntBASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 ZBTB12BP-201ENST00000314232 1122 ntBASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 RNA5SP412-201ENST00000516234 123 ntBASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 RPL8-205ENST00000527914 551 ntTSL 3 BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RNFT1Q5M7Z0 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
RNFT1Q5M7Z0 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
RNFT1Q5M7Z0 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
RNFT1Q5M7Z0 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC14.02□□□□□ -0.16
RNFT1Q5M7Z0 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
RNFT1Q5M7Z0 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
RNFT1Q5M7Z0 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC14.02□□□□□ -0.16
RNFT1Q5M7Z0 PCDHB19P-201ENST00000570871 2371 ntBASIC14.02□□□□□ -0.16
RNFT1Q5M7Z0 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RNFT1Q5M7Z0 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
RNFT1Q5M7Z0 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
RNFT1Q5M7Z0 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
RNFT1Q5M7Z0 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
RNFT1Q5M7Z0 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RNFT1Q5M7Z0 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC14.02□□□□□ -0.16
RNFT1Q5M7Z0 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC14.02□□□□□ -0.17
RNFT1Q5M7Z0 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RNFT1Q5M7Z0 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
RNFT1Q5M7Z0 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RNFT1Q5M7Z0 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC14.02□□□□□ -0.17
RNFT1Q5M7Z0 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC14.02□□□□□ -0.17
RNFT1Q5M7Z0 AC025181.2-201ENST00000606994 802 ntBASIC14.02□□□□□ -0.17
RNFT1Q5M7Z0 AP005019.2-201ENST00000615104 511 ntBASIC14.02□□□□□ -0.17
RNFT1Q5M7Z0 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RNFT1Q5M7Z0 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
RNFT1Q5M7Z0 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC14.02□□□□□ -0.17
RNFT1Q5M7Z0 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RNFT1Q5M7Z0 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC14.02□□□□□ -0.17
RNFT1Q5M7Z0 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
RNFT1Q5M7Z0 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC14.02□□□□□ -0.17
RNFT1Q5M7Z0 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RNFT1Q5M7Z0 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RNFT1Q5M7Z0 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
RNFT1Q5M7Z0 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC14.01□□□□□ -0.17
RNFT1Q5M7Z0 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
RNFT1Q5M7Z0 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RNFT1Q5M7Z0 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC14.01□□□□□ -0.17
RNFT1Q5M7Z0 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RNFT1Q5M7Z0 AC022188.1-201ENST00000620960 1664 ntBASIC14.01□□□□□ -0.17
RNFT1Q5M7Z0 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RNFT1Q5M7Z0 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RNFT1Q5M7Z0 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC14.01□□□□□ -0.17
RNFT1Q5M7Z0 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC14.01□□□□□ -0.17
RNFT1Q5M7Z0 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
RNFT1Q5M7Z0 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
RNFT1Q5M7Z0 CYP2T1P-202ENST00000641596 2535 ntBASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms