Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC16.47■□□□□ 0.23
BDNFP23560 SOCS2P1-201ENST00000417727 557 ntBASIC16.47■□□□□ 0.23
BDNFP23560 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC16.47■□□□□ 0.23
BDNFP23560 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.47■□□□□ 0.23
BDNFP23560 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
BDNFP23560 AC007389.4-201ENST00000454674 793 ntBASIC16.47■□□□□ 0.23
BDNFP23560 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC16.47■□□□□ 0.23
BDNFP23560 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.47■□□□□ 0.23
BDNFP23560 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC16.47■□□□□ 0.23
BDNFP23560 FUZ-207ENST00000526575 482 ntTSL 4 BASIC16.47■□□□□ 0.23
BDNFP23560 PUDP-206ENST00000540122 825 ntTSL 2 BASIC16.47■□□□□ 0.23
BDNFP23560 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
BDNFP23560 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
BDNFP23560 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC16.47■□□□□ 0.23
BDNFP23560 RPSAP52-203ENST00000622976 1023 ntBASIC16.47■□□□□ 0.23
BDNFP23560 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.47■□□□□ 0.23
BDNFP23560 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
BDNFP23560 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
BDNFP23560 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.47■□□□□ 0.23
BDNFP23560 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.47■□□□□ 0.23
BDNFP23560 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
BDNFP23560 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.47■□□□□ 0.23
BDNFP23560 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
BDNFP23560 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
BDNFP23560 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
BDNFP23560 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16.47■□□□□ 0.23
BDNFP23560 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
BDNFP23560 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.47■□□□□ 0.23
BDNFP23560 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
BDNFP23560 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
BDNFP23560 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
BDNFP23560 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
BDNFP23560 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
BDNFP23560 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.46■□□□□ 0.23
BDNFP23560 DRD5P1-201ENST00000456605 1438 ntBASIC16.46■□□□□ 0.23
BDNFP23560 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
BDNFP23560 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.46■□□□□ 0.23
BDNFP23560 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
BDNFP23560 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.46■□□□□ 0.23
BDNFP23560 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC16.46■□□□□ 0.23
BDNFP23560 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
BDNFP23560 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
BDNFP23560 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
BDNFP23560 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
BDNFP23560 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.46■□□□□ 0.23
BDNFP23560 AC009090.5-201ENST00000624886 2285 ntBASIC16.46■□□□□ 0.23
BDNFP23560 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.23
BDNFP23560 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC16.46■□□□□ 0.23
BDNFP23560 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC16.46■□□□□ 0.23
BDNFP23560 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC16.46■□□□□ 0.23
BDNFP23560 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC16.46■□□□□ 0.23
BDNFP23560 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC16.46■□□□□ 0.23
BDNFP23560 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC16.46■□□□□ 0.23
BDNFP23560 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC16.46■□□□□ 0.23
BDNFP23560 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC16.46■□□□□ 0.23
BDNFP23560 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
BDNFP23560 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.46■□□□□ 0.23
BDNFP23560 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
BDNFP23560 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
BDNFP23560 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
BDNFP23560 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
BDNFP23560 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.46■□□□□ 0.23
BDNFP23560 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
BDNFP23560 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
BDNFP23560 MFF-204ENST00000353339 2186 ntTSL 5 BASIC16.45■□□□□ 0.22
BDNFP23560 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
BDNFP23560 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
BDNFP23560 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.45■□□□□ 0.22
BDNFP23560 HYMAI-201ENST00000635591 3347 ntBASIC16.45■□□□□ 0.22
BDNFP23560 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
BDNFP23560 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
BDNFP23560 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
BDNFP23560 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
BDNFP23560 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC16.45■□□□□ 0.22
BDNFP23560 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC16.45■□□□□ 0.22
BDNFP23560 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
BDNFP23560 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.45■□□□□ 0.22
BDNFP23560 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
BDNFP23560 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
BDNFP23560 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC16.45■□□□□ 0.22
BDNFP23560 AC026410.3-201ENST00000514280 936 ntBASIC16.45■□□□□ 0.22
BDNFP23560 TBCB-211ENST00000589996 724 ntTSL 3 BASIC16.45■□□□□ 0.22
BDNFP23560 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
BDNFP23560 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC16.45■□□□□ 0.22
BDNFP23560 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.45■□□□□ 0.22
BDNFP23560 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
BDNFP23560 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
BDNFP23560 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
BDNFP23560 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
BDNFP23560 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.45■□□□□ 0.22
BDNFP23560 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC16.45■□□□□ 0.22
BDNFP23560 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
BDNFP23560 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
BDNFP23560 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
BDNFP23560 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
BDNFP23560 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
BDNFP23560 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
BDNFP23560 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
BDNFP23560 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.44■□□□□ 0.22
BDNFP23560 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms