Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CTDNEP1O95476 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC18.06■□□□□ 0.48
CTDNEP1O95476 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CTDNEP1O95476 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CTDNEP1O95476 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CTDNEP1O95476 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
CTDNEP1O95476 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CTDNEP1O95476 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CTDNEP1O95476 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC18.06■□□□□ 0.48
CTDNEP1O95476 AC022144.1-201ENST00000602255 1580 ntBASIC18.06■□□□□ 0.48
CTDNEP1O95476 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CTDNEP1O95476 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CTDNEP1O95476 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CTDNEP1O95476 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC18.06■□□□□ 0.48
CTDNEP1O95476 AC104457.1-201ENST00000401024 814 ntBASIC18.06■□□□□ 0.48
CTDNEP1O95476 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CTDNEP1O95476 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC18.06■□□□□ 0.48
CTDNEP1O95476 TMPRSS11CP-201ENST00000453277 683 ntBASIC18.06■□□□□ 0.48
CTDNEP1O95476 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC18.06■□□□□ 0.48
CTDNEP1O95476 FTH1-202ENST00000526640 786 ntTSL 2 BASIC18.06■□□□□ 0.48
CTDNEP1O95476 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CTDNEP1O95476 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC18.06■□□□□ 0.48
CTDNEP1O95476 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC18.06■□□□□ 0.48
CTDNEP1O95476 SRD5A3P1-201ENST00000603021 949 ntBASIC18.06■□□□□ 0.48
CTDNEP1O95476 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC18.06■□□□□ 0.48
CTDNEP1O95476 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CTDNEP1O95476 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CTDNEP1O95476 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CTDNEP1O95476 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CTDNEP1O95476 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CTDNEP1O95476 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC18.06■□□□□ 0.48
CTDNEP1O95476 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC18.06■□□□□ 0.48
CTDNEP1O95476 CLK3P2-201ENST00000427566 1453 ntBASIC18.06■□□□□ 0.48
CTDNEP1O95476 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CTDNEP1O95476 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC18.06■□□□□ 0.48
CTDNEP1O95476 PCDHGB8P-201ENST00000502926 1973 ntBASIC18.06■□□□□ 0.48
CTDNEP1O95476 SLC9A7P1-202ENST00000556476 2239 ntBASIC18.06■□□□□ 0.48
CTDNEP1O95476 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CTDNEP1O95476 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CTDNEP1O95476 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTDNEP1O95476 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC18.05■□□□□ 0.48
CTDNEP1O95476 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTDNEP1O95476 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC18.05■□□□□ 0.48
CTDNEP1O95476 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC18.05■□□□□ 0.48
CTDNEP1O95476 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTDNEP1O95476 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
CTDNEP1O95476 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTDNEP1O95476 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC18.05■□□□□ 0.48
CTDNEP1O95476 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTDNEP1O95476 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTDNEP1O95476 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTDNEP1O95476 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CTDNEP1O95476 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC18.05■□□□□ 0.48
CTDNEP1O95476 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC18.05■□□□□ 0.48
CTDNEP1O95476 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTDNEP1O95476 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC18.05■□□□□ 0.48
CTDNEP1O95476 VMA21-202ENST00000370361 693 ntTSL 5 BASIC18.05■□□□□ 0.48
CTDNEP1O95476 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC18.05■□□□□ 0.48
CTDNEP1O95476 PFN2-205ENST00000461868 613 ntTSL 2 BASIC18.05■□□□□ 0.48
CTDNEP1O95476 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC18.05■□□□□ 0.48
CTDNEP1O95476 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC18.05■□□□□ 0.48
CTDNEP1O95476 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CTDNEP1O95476 GPX4-206ENST00000588919 803 ntTSL 2 BASIC18.05■□□□□ 0.48
CTDNEP1O95476 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CTDNEP1O95476 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CTDNEP1O95476 AC106881.1-201ENST00000605849 3329 ntBASIC18.05■□□□□ 0.48
CTDNEP1O95476 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTDNEP1O95476 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTDNEP1O95476 BTBD7P1-201ENST00000447253 1453 ntBASIC18.05■□□□□ 0.48
CTDNEP1O95476 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTDNEP1O95476 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CTDNEP1O95476 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC18.05■□□□□ 0.48
CTDNEP1O95476 GPI-205ENST00000586425 1799 ntTSL 5 BASIC18.04■□□□□ 0.48
CTDNEP1O95476 ACE3P-201ENST00000423435 1973 ntBASIC18.04■□□□□ 0.48
CTDNEP1O95476 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC18.04■□□□□ 0.48
CTDNEP1O95476 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTDNEP1O95476 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC18.04■□□□□ 0.48
CTDNEP1O95476 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTDNEP1O95476 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
CTDNEP1O95476 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTDNEP1O95476 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CTDNEP1O95476 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CTDNEP1O95476 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CTDNEP1O95476 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTDNEP1O95476 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC18.04■□□□□ 0.48
CTDNEP1O95476 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC18.04■□□□□ 0.48
CTDNEP1O95476 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
CTDNEP1O95476 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CTDNEP1O95476 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC18.04■□□□□ 0.48
CTDNEP1O95476 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC18.04■□□□□ 0.48
CTDNEP1O95476 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTDNEP1O95476 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC18.04■□□□□ 0.48
CTDNEP1O95476 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTDNEP1O95476 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC18.04■□□□□ 0.48
CTDNEP1O95476 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC18.04■□□□□ 0.48
CTDNEP1O95476 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC18.04■□□□□ 0.48
CTDNEP1O95476 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CTDNEP1O95476 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC18.04■□□□□ 0.48
CTDNEP1O95476 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTDNEP1O95476 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms