Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIMA1Q9UHB6 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 IMPDH1P4-201ENST00000445028 1534 ntBASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 MIR574-201ENST00000385209 96 ntBASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 GPS2P2-201ENST00000430745 888 ntBASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 AC005237.2-201ENST00000434368 219 ntBASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 KRT18P58-201ENST00000527480 1120 ntBASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 AL513210.1-201ENST00000629608 234 ntBASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 MFF-204ENST00000353339 2186 ntTSL 5 BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
LIMA1Q9UHB6 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 REXO1L2P-201ENST00000425429 2069 ntBASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 AC074338.1-201ENST00000416825 156 ntBASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 AC011467.4-201ENST00000594891 528 ntBASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 RN7SL828P-201ENST00000607615 303 ntBASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 SNX18-202ENST00000343017 3140 ntBASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMA1Q9UHB6 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 AC005912.2-201ENST00000619492 2400 ntBASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 OVCH1-AS1-204ENST00000641955 5529 ntBASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 CICP14-201ENST00000629111 2732 ntBASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 STOM-202ENST00000347359 870 ntTSL 2 BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIMA1Q9UHB6 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms