Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 AL365203.3-201ENST00000609742 2057 ntBASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 DFFBP1-201ENST00000433250 979 ntBASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 LHX6-205ENST00000464484 666 ntTSL 2 BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 COX11-202ENST00000571584 1108 ntTSL 2 BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 AL391825.1-201ENST00000457671 1364 ntBASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 DEK-201ENST00000244776 1441 ntTSL 2 BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM39Q9HCM9 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC15.58■□□□□ 0.09
TRIM39Q9HCM9 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC15.58■□□□□ 0.09
TRIM39Q9HCM9 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC15.58■□□□□ 0.09
TRIM39Q9HCM9 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.09
TRIM39Q9HCM9 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
TRIM39Q9HCM9 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
TRIM39Q9HCM9 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 AC022188.1-201ENST00000620960 1664 ntBASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 RHOA-206ENST00000454011 889 ntTSL 2 BASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 AC023310.3-201ENST00000557027 670 ntBASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 AC100756.1-201ENST00000562736 682 ntBASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 AC138749.3-201ENST00000567691 622 ntBASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 AL132655.2-201ENST00000596276 594 ntBASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 AC116165.1-201ENST00000611806 668 ntBASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 NID2-208ENST00000617139 3827 ntTSL 5 BASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC15.58■□□□□ 0.08
TRIM39Q9HCM9 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM39Q9HCM9 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 119.4 ms