Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 SP100-205ENST00000409824 1802 ntTSL 5 BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 TMEM14DP-201ENST00000422205 345 ntBASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 ACTG1P3-201ENST00000431775 1114 ntBASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 AC007274.1-201ENST00000439805 662 ntBASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 AC022210.1-201ENST00000449856 793 ntBASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 RPL13AP25-201ENST00000484130 612 ntBASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 HNRNPA1P13-201ENST00000510646 963 ntBASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 KRT8P22-201ENST00000562317 1415 ntBASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 AL512343.1-201ENST00000605837 169 ntBASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 USP32P1-208ENST00000506594 1164 ntBASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 ORC6-206ENST00000568364 888 ntTSL 5 BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 BTNL10-201ENST00000595971 695 ntBASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC17.16■□□□□ 0.34
TRAIPQ9BWF2 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 LINC00554-201ENST00000564841 3011 ntBASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 BOLA2P3-201ENST00000404566 256 ntBASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC17.15■□□□□ 0.34
TRAIPQ9BWF2 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms