Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC15.11■□□□□ 0.01
VMP1Q96GC9 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VMP1Q96GC9 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VMP1Q96GC9 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
VMP1Q96GC9 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC15.11■□□□□ 0.01
VMP1Q96GC9 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VMP1Q96GC9 CICP4-201ENST00000447359 2812 ntBASIC15.11■□□□□ 0.01
VMP1Q96GC9 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VMP1Q96GC9 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VMP1Q96GC9 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
VMP1Q96GC9 MIR943-201ENST00000401286 94 ntBASIC15.11■□□□□ 0.01
VMP1Q96GC9 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
VMP1Q96GC9 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC15.11■□□□□ 0.01
VMP1Q96GC9 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC15.11■□□□□ 0.01
VMP1Q96GC9 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.11■□□□□ 0.01
VMP1Q96GC9 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
VMP1Q96GC9 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VMP1Q96GC9 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC15.11■□□□□ 0.01
VMP1Q96GC9 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VMP1Q96GC9 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
VMP1Q96GC9 DUX4L27-201ENST00000554796 1261 ntBASIC15.11■□□□□ 0.01
VMP1Q96GC9 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC15.11■□□□□ 0.01
VMP1Q96GC9 AL158211.3-201ENST00000607385 239 ntBASIC15.11■□□□□ 0.01
VMP1Q96GC9 COQ4-205ENST00000609948 956 ntTSL 2 BASIC15.11■□□□□ 0.01
VMP1Q96GC9 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VMP1Q96GC9 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC15.11■□□□□ 0.01
VMP1Q96GC9 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
VMP1Q96GC9 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
VMP1Q96GC9 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
VMP1Q96GC9 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VMP1Q96GC9 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VMP1Q96GC9 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
VMP1Q96GC9 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC15.11■□□□□ 0.01
VMP1Q96GC9 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.11■□□□□ 0.01
VMP1Q96GC9 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
VMP1Q96GC9 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VMP1Q96GC9 AL592424.1-201ENST00000563624 1536 ntBASIC15.11■□□□□ 0.01
VMP1Q96GC9 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VMP1Q96GC9 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC15.11■□□□□ 0.01
VMP1Q96GC9 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
VMP1Q96GC9 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC15.1■□□□□ 0.01
VMP1Q96GC9 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC15.1■□□□□ 0.01
VMP1Q96GC9 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
VMP1Q96GC9 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
VMP1Q96GC9 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
VMP1Q96GC9 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VMP1Q96GC9 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VMP1Q96GC9 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC15.1■□□□□ 0.01
VMP1Q96GC9 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC15.1■□□□□ 0.01
VMP1Q96GC9 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.1■□□□□ 0.01
VMP1Q96GC9 USP31-203ENST00000567975 2142 ntTSL 2 BASIC15.1■□□□□ 0.01
VMP1Q96GC9 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.1■□□□□ 0.01
VMP1Q96GC9 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VMP1Q96GC9 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VMP1Q96GC9 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VMP1Q96GC9 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC15.1■□□□□ 0.01
VMP1Q96GC9 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
VMP1Q96GC9 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
VMP1Q96GC9 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
VMP1Q96GC9 VMA21-202ENST00000370361 693 ntTSL 5 BASIC15.1■□□□□ 0.01
VMP1Q96GC9 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VMP1Q96GC9 MIR770-201ENST00000390219 98 ntBASIC15.1■□□□□ 0.01
VMP1Q96GC9 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC15.1■□□□□ 0.01
VMP1Q96GC9 AC105021.1-202ENST00000570572 669 ntBASIC15.1■□□□□ 0.01
VMP1Q96GC9 LITAF-210ENST00000571976 548 ntTSL 2 BASIC15.1■□□□□ 0.01
VMP1Q96GC9 LITAF-214ENST00000574703 486 ntTSL 2 BASIC15.1■□□□□ 0.01
VMP1Q96GC9 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VMP1Q96GC9 MIR4321-201ENST00000592276 80 ntBASIC15.1■□□□□ 0.01
VMP1Q96GC9 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC15.1■□□□□ 0.01
VMP1Q96GC9 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC15.1■□□□□ 0.01
VMP1Q96GC9 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
VMP1Q96GC9 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
VMP1Q96GC9 AC005089.1-201ENST00000619486 2241 ntBASIC15.1■□□□□ 0.01
VMP1Q96GC9 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC15.1■□□□□ 0.01
VMP1Q96GC9 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC15.1■□□□□ 0.01
VMP1Q96GC9 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
VMP1Q96GC9 AC007292.2-201ENST00000593524 1812 ntBASIC15.1■□□□□ 0.01
VMP1Q96GC9 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VMP1Q96GC9 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
VMP1Q96GC9 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC15.1■□□□□ 0.01
VMP1Q96GC9 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VMP1Q96GC9 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
VMP1Q96GC9 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VMP1Q96GC9 AC006486.2-201ENST00000624246 2199 ntBASIC15.09■□□□□ 0.01
VMP1Q96GC9 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.09■□□□□ 0.01
VMP1Q96GC9 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC15.09■□□□□ 0.01
VMP1Q96GC9 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VMP1Q96GC9 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC15.09■□□□□ 0.01
VMP1Q96GC9 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VMP1Q96GC9 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VMP1Q96GC9 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC15.09■□□□□ 0.01
VMP1Q96GC9 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
VMP1Q96GC9 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VMP1Q96GC9 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC15.09■□□□□ 0.01
VMP1Q96GC9 AL359258.3-201ENST00000622910 2331 ntBASIC15.09■□□□□ 0.01
VMP1Q96GC9 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC15.09■□□□□ 0.01
VMP1Q96GC9 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
VMP1Q96GC9 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC15.09■□□□□ 0.01
VMP1Q96GC9 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC15.09■□□□□ 0.01
VMP1Q96GC9 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms