Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 NDUFS6P1-201ENST00000485187 316 ntBASIC10.67□□□□□ -0.7
CSMD3Q7Z407 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 IGHV3-37-201ENST00000518544 340 ntBASIC10.67□□□□□ -0.7
CSMD3Q7Z407 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 EIF5AP2-201ENST00000585668 1047 ntBASIC10.67□□□□□ -0.7
CSMD3Q7Z407 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 AC116345.2-201ENST00000512837 523 ntBASIC10.67□□□□□ -0.7
CSMD3Q7Z407 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 AC114812.1-204ENST00000449669 728 ntBASIC10.67□□□□□ -0.7
CSMD3Q7Z407 AC104073.2-201ENST00000453737 312 ntBASIC10.67□□□□□ -0.7
CSMD3Q7Z407 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 STUB1-204ENST00000564370 875 ntTSL 2 BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC10.67□□□□□ -0.7
CSMD3Q7Z407 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
CSMD3Q7Z407 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 SLC9A7P1-202ENST00000556476 2239 ntBASIC10.66□□□□□ -0.7
CSMD3Q7Z407 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 AC097065.1-201ENST00000425737 517 ntBASIC10.66□□□□□ -0.7
CSMD3Q7Z407 TBCB-211ENST00000589996 724 ntTSL 3 BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 AC007718.1-201ENST00000621078 280 ntBASIC10.66□□□□□ -0.7
CSMD3Q7Z407 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 TPM3P8-201ENST00000330554 643 ntBASIC10.66□□□□□ -0.7
CSMD3Q7Z407 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 MIR4649-201ENST00000582839 64 ntBASIC10.66□□□□□ -0.7
CSMD3Q7Z407 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CSMD3Q7Z407 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms