Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
VPS13CQ709C8 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
VPS13CQ709C8 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
VPS13CQ709C8 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
VPS13CQ709C8 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
VPS13CQ709C8 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
VPS13CQ709C8 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
VPS13CQ709C8 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC12.76□□□□□ -0.37
VPS13CQ709C8 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
VPS13CQ709C8 AC006449.5-201ENST00000610658 2098 ntBASIC12.76□□□□□ -0.37
VPS13CQ709C8 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
VPS13CQ709C8 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
VPS13CQ709C8 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC12.76□□□□□ -0.37
VPS13CQ709C8 RN7SL818P-201ENST00000485099 259 ntBASIC12.76□□□□□ -0.37
VPS13CQ709C8 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC12.76□□□□□ -0.37
VPS13CQ709C8 AC005357.2-202ENST00000590507 1060 ntBASIC12.76□□□□□ -0.37
VPS13CQ709C8 RN7SL725P-201ENST00000606439 259 ntBASIC12.76□□□□□ -0.37
VPS13CQ709C8 AC091544.8-201ENST00000619490 361 ntBASIC12.76□□□□□ -0.37
VPS13CQ709C8 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
VPS13CQ709C8 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
VPS13CQ709C8 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC12.76□□□□□ -0.37
VPS13CQ709C8 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
VPS13CQ709C8 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
VPS13CQ709C8 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
VPS13CQ709C8 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
VPS13CQ709C8 HNRNPA1P63-201ENST00000427917 963 ntBASIC12.76□□□□□ -0.37
VPS13CQ709C8 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC12.76□□□□□ -0.37
VPS13CQ709C8 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
VPS13CQ709C8 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
VPS13CQ709C8 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
VPS13CQ709C8 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
VPS13CQ709C8 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
VPS13CQ709C8 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
VPS13CQ709C8 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
VPS13CQ709C8 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC12.76□□□□□ -0.37
VPS13CQ709C8 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
VPS13CQ709C8 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC12.75□□□□□ -0.37
VPS13CQ709C8 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
VPS13CQ709C8 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC12.75□□□□□ -0.37
VPS13CQ709C8 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
VPS13CQ709C8 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
VPS13CQ709C8 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC12.75□□□□□ -0.37
VPS13CQ709C8 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC12.75□□□□□ -0.37
VPS13CQ709C8 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
VPS13CQ709C8 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC12.75□□□□□ -0.37
VPS13CQ709C8 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC12.75□□□□□ -0.37
VPS13CQ709C8 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
VPS13CQ709C8 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC12.75□□□□□ -0.37
VPS13CQ709C8 AC244157.2-201ENST00000616239 1006 ntBASIC12.75□□□□□ -0.37
VPS13CQ709C8 AC132938.4-201ENST00000623835 848 ntBASIC12.75□□□□□ -0.37
VPS13CQ709C8 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
VPS13CQ709C8 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.37
VPS13CQ709C8 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC12.75□□□□□ -0.37
VPS13CQ709C8 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
VPS13CQ709C8 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
VPS13CQ709C8 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
VPS13CQ709C8 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC12.75□□□□□ -0.37
VPS13CQ709C8 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC12.75□□□□□ -0.37
VPS13CQ709C8 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
VPS13CQ709C8 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
VPS13CQ709C8 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
VPS13CQ709C8 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
VPS13CQ709C8 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC12.75□□□□□ -0.37
VPS13CQ709C8 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
VPS13CQ709C8 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC12.75□□□□□ -0.37
VPS13CQ709C8 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
VPS13CQ709C8 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC12.75□□□□□ -0.37
VPS13CQ709C8 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
VPS13CQ709C8 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
VPS13CQ709C8 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
VPS13CQ709C8 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC12.75□□□□□ -0.37
VPS13CQ709C8 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
VPS13CQ709C8 AC106820.3-201ENST00000561653 397 ntBASIC12.75□□□□□ -0.37
VPS13CQ709C8 AC068587.8-201ENST00000641239 219 ntBASIC12.75□□□□□ -0.37
VPS13CQ709C8 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
VPS13CQ709C8 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
VPS13CQ709C8 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
VPS13CQ709C8 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
VPS13CQ709C8 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
VPS13CQ709C8 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
VPS13CQ709C8 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC12.75□□□□□ -0.37
VPS13CQ709C8 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
VPS13CQ709C8 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
VPS13CQ709C8 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
VPS13CQ709C8 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC12.75□□□□□ -0.37
VPS13CQ709C8 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
VPS13CQ709C8 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
VPS13CQ709C8 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC12.75□□□□□ -0.37
VPS13CQ709C8 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC12.75□□□□□ -0.37
VPS13CQ709C8 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC12.75□□□□□ -0.37
VPS13CQ709C8 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
VPS13CQ709C8 AC138894.2-201ENST00000602838 371 ntBASIC12.75□□□□□ -0.37
VPS13CQ709C8 AC011477.6-201ENST00000604980 1927 ntBASIC12.75□□□□□ -0.37
VPS13CQ709C8 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC12.75□□□□□ -0.37
VPS13CQ709C8 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
VPS13CQ709C8 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
VPS13CQ709C8 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC12.74□□□□□ -0.37
VPS13CQ709C8 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC12.74□□□□□ -0.37
VPS13CQ709C8 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
VPS13CQ709C8 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms