Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HIST1H1AQ02539 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HIST1H1AQ02539 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC12.1□□□□□ -0.47
HIST1H1AQ02539 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC12.1□□□□□ -0.47
HIST1H1AQ02539 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 NEK7-201ENST00000367383 586 ntTSL 2 BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 AL591424.1-201ENST00000442569 1213 ntBASIC12.09□□□□□ -0.47
HIST1H1AQ02539 KRT18P3-201ENST00000451602 1288 ntBASIC12.09□□□□□ -0.47
HIST1H1AQ02539 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 AC002347.1-201ENST00000569543 541 ntBASIC12.09□□□□□ -0.47
HIST1H1AQ02539 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 AC140113.2-201ENST00000604370 208 ntBASIC12.09□□□□□ -0.47
HIST1H1AQ02539 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HIST1H1AQ02539 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC12.08□□□□□ -0.47
HIST1H1AQ02539 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
HIST1H1AQ02539 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC12.08□□□□□ -0.47
HIST1H1AQ02539 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.47
HIST1H1AQ02539 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC12.08□□□□□ -0.47
HIST1H1AQ02539 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC12.08□□□□□ -0.47
HIST1H1AQ02539 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC12.08□□□□□ -0.47
HIST1H1AQ02539 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC12.08□□□□□ -0.47
HIST1H1AQ02539 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.47
HIST1H1AQ02539 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC12.08□□□□□ -0.47
HIST1H1AQ02539 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
HIST1H1AQ02539 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HIST1H1AQ02539 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HIST1H1AQ02539 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC12.08□□□□□ -0.48
HIST1H1AQ02539 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC12.08□□□□□ -0.48
HIST1H1AQ02539 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
HIST1H1AQ02539 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HIST1H1AQ02539 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HIST1H1AQ02539 LINC00528-201ENST00000600723 2160 ntBASIC12.08□□□□□ -0.48
HIST1H1AQ02539 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HIST1H1AQ02539 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC12.08□□□□□ -0.48
HIST1H1AQ02539 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC12.08□□□□□ -0.48
HIST1H1AQ02539 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC12.08□□□□□ -0.48
HIST1H1AQ02539 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC12.08□□□□□ -0.48
HIST1H1AQ02539 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC12.08□□□□□ -0.48
HIST1H1AQ02539 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
HIST1H1AQ02539 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
HIST1H1AQ02539 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
HIST1H1AQ02539 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
HIST1H1AQ02539 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HIST1H1AQ02539 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
HIST1H1AQ02539 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC12.08□□□□□ -0.48
HIST1H1AQ02539 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
HIST1H1AQ02539 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
HIST1H1AQ02539 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC12.08□□□□□ -0.48
HIST1H1AQ02539 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC12.08□□□□□ -0.48
HIST1H1AQ02539 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC12.08□□□□□ -0.48
HIST1H1AQ02539 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC12.08□□□□□ -0.48
HIST1H1AQ02539 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC12.08□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms