Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TPM1P09493 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TPM1P09493 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TPM1P09493 AC148477.4-201ENST00000613430 1793 ntBASIC17.35■□□□□ 0.37
TPM1P09493 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM1P09493 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM1P09493 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM1P09493 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
TPM1P09493 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM1P09493 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TPM1P09493 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17.35■□□□□ 0.37
TPM1P09493 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC17.35■□□□□ 0.37
TPM1P09493 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM1P09493 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC17.35■□□□□ 0.37
TPM1P09493 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM1P09493 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM1P09493 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM1P09493 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM1P09493 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.35■□□□□ 0.37
TPM1P09493 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC17.35■□□□□ 0.37
TPM1P09493 AC098859.1-201ENST00000502915 1238 ntBASIC17.35■□□□□ 0.37
TPM1P09493 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC17.35■□□□□ 0.37
TPM1P09493 AC093909.1-201ENST00000504731 1122 ntBASIC17.35■□□□□ 0.37
TPM1P09493 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TPM1P09493 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.35■□□□□ 0.37
TPM1P09493 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC17.35■□□□□ 0.37
TPM1P09493 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
TPM1P09493 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.35■□□□□ 0.37
TPM1P09493 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC17.35■□□□□ 0.37
TPM1P09493 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.35■□□□□ 0.37
TPM1P09493 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC17.35■□□□□ 0.37
TPM1P09493 AL773604.1-201ENST00000617417 272 ntBASIC17.35■□□□□ 0.37
TPM1P09493 AC148477.8-201ENST00000624298 468 ntBASIC17.35■□□□□ 0.37
TPM1P09493 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TPM1P09493 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM1P09493 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC17.35■□□□□ 0.37
TPM1P09493 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM1P09493 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM1P09493 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TPM1P09493 MROH4P-201ENST00000431302 1578 ntBASIC17.35■□□□□ 0.37
TPM1P09493 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
TPM1P09493 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
TPM1P09493 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.35■□□□□ 0.37
TPM1P09493 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
TPM1P09493 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
TPM1P09493 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM1P09493 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
TPM1P09493 AC009090.5-201ENST00000624886 2285 ntBASIC17.35■□□□□ 0.37
TPM1P09493 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TPM1P09493 GSN-215ENST00000545652 2428 ntTSL 2 BASIC17.35■□□□□ 0.37
TPM1P09493 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC17.35■□□□□ 0.37
TPM1P09493 AC018892.3-201ENST00000623986 2499 ntBASIC17.35■□□□□ 0.37
TPM1P09493 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TPM1P09493 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
TPM1P09493 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
TPM1P09493 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
TPM1P09493 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
TPM1P09493 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
TPM1P09493 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TPM1P09493 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TPM1P09493 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TPM1P09493 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
TPM1P09493 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TPM1P09493 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.34■□□□□ 0.37
TPM1P09493 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TPM1P09493 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
TPM1P09493 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TPM1P09493 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC17.34■□□□□ 0.37
TPM1P09493 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TPM1P09493 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TPM1P09493 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
TPM1P09493 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TPM1P09493 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.34■□□□□ 0.37
TPM1P09493 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
TPM1P09493 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC17.34■□□□□ 0.37
TPM1P09493 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TPM1P09493 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.34■□□□□ 0.37
TPM1P09493 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TPM1P09493 AC009947.1-201ENST00000444350 727 ntBASIC17.34■□□□□ 0.37
TPM1P09493 EMBP1-201ENST00000458200 901 ntBASIC17.34■□□□□ 0.37
TPM1P09493 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TPM1P09493 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
TPM1P09493 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TPM1P09493 BNIP3P1-202ENST00000550043 1585 ntBASIC17.34■□□□□ 0.37
TPM1P09493 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
TPM1P09493 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC17.34■□□□□ 0.37
TPM1P09493 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
TPM1P09493 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
TPM1P09493 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
TPM1P09493 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
TPM1P09493 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TPM1P09493 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC17.34■□□□□ 0.37
TPM1P09493 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC17.34■□□□□ 0.37
TPM1P09493 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC17.33■□□□□ 0.37
TPM1P09493 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
TPM1P09493 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC17.33■□□□□ 0.37
TPM1P09493 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
TPM1P09493 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.37
TPM1P09493 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
TPM1P09493 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms