Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SPTA1P02549 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SPTA1P02549 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SPTA1P02549 TPM3P8-201ENST00000330554 643 ntBASIC14.15□□□□□ -0.14
SPTA1P02549 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC14.15□□□□□ -0.14
SPTA1P02549 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC14.15□□□□□ -0.14
SPTA1P02549 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC14.15□□□□□ -0.14
SPTA1P02549 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC14.15□□□□□ -0.14
SPTA1P02549 COX5BP1-201ENST00000507622 393 ntBASIC14.15□□□□□ -0.14
SPTA1P02549 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC14.15□□□□□ -0.14
SPTA1P02549 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SPTA1P02549 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SPTA1P02549 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
SPTA1P02549 TP73-209ENST00000603362 1668 ntTSL 5 BASIC14.15□□□□□ -0.14
SPTA1P02549 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
SPTA1P02549 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC14.15□□□□□ -0.14
SPTA1P02549 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SPTA1P02549 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SPTA1P02549 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SPTA1P02549 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
SPTA1P02549 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SPTA1P02549 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
SPTA1P02549 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
SPTA1P02549 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC14.14□□□□□ -0.15
SPTA1P02549 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC14.14□□□□□ -0.15
SPTA1P02549 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SPTA1P02549 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC14.14□□□□□ -0.15
SPTA1P02549 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SPTA1P02549 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SPTA1P02549 RAC2-202ENST00000401529 569 ntTSL 4 BASIC14.14□□□□□ -0.15
SPTA1P02549 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC14.14□□□□□ -0.15
SPTA1P02549 HOMER2P2-201ENST00000451621 847 ntBASIC14.14□□□□□ -0.15
SPTA1P02549 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC14.14□□□□□ -0.15
SPTA1P02549 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
SPTA1P02549 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC14.14□□□□□ -0.15
SPTA1P02549 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC14.14□□□□□ -0.15
SPTA1P02549 GPX4-206ENST00000588919 803 ntTSL 2 BASIC14.14□□□□□ -0.15
SPTA1P02549 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC14.14□□□□□ -0.15
SPTA1P02549 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC14.14□□□□□ -0.15
SPTA1P02549 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SPTA1P02549 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SPTA1P02549 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.14□□□□□ -0.15
SPTA1P02549 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SPTA1P02549 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SPTA1P02549 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SPTA1P02549 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC14.14□□□□□ -0.15
SPTA1P02549 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SPTA1P02549 CMIP-202ENST00000537098 4357 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SPTA1P02549 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.14□□□□□ -0.15
SPTA1P02549 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SPTA1P02549 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SPTA1P02549 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC14.14□□□□□ -0.15
SPTA1P02549 AC018892.3-201ENST00000623986 2499 ntBASIC14.14□□□□□ -0.15
SPTA1P02549 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SPTA1P02549 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC14.14□□□□□ -0.15
SPTA1P02549 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC14.14□□□□□ -0.15
SPTA1P02549 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC14.14□□□□□ -0.15
SPTA1P02549 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
SPTA1P02549 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SPTA1P02549 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SPTA1P02549 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC14.14□□□□□ -0.15
SPTA1P02549 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SPTA1P02549 OS9-205ENST00000413095 1660 ntTSL 2 BASIC14.14□□□□□ -0.15
SPTA1P02549 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC14.14□□□□□ -0.15
SPTA1P02549 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SPTA1P02549 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
SPTA1P02549 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SPTA1P02549 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
SPTA1P02549 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC14.13□□□□□ -0.15
SPTA1P02549 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SPTA1P02549 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SPTA1P02549 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC14.13□□□□□ -0.15
SPTA1P02549 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC14.13□□□□□ -0.15
SPTA1P02549 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC14.13□□□□□ -0.15
SPTA1P02549 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC14.13□□□□□ -0.15
SPTA1P02549 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC14.13□□□□□ -0.15
SPTA1P02549 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC14.13□□□□□ -0.15
SPTA1P02549 PPY2P-201ENST00000582808 702 ntBASIC14.13□□□□□ -0.15
SPTA1P02549 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SPTA1P02549 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SPTA1P02549 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
SPTA1P02549 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SPTA1P02549 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC14.13□□□□□ -0.15
SPTA1P02549 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SPTA1P02549 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
SPTA1P02549 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
SPTA1P02549 AP001282.1-201ENST00000531301 1499 ntBASIC14.13□□□□□ -0.15
SPTA1P02549 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC14.13□□□□□ -0.15
SPTA1P02549 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
SPTA1P02549 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
SPTA1P02549 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
SPTA1P02549 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SPTA1P02549 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
SPTA1P02549 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SPTA1P02549 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.13□□□□□ -0.15
SPTA1P02549 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC14.13□□□□□ -0.15
SPTA1P02549 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC14.13□□□□□ -0.15
SPTA1P02549 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC14.13□□□□□ -0.15
SPTA1P02549 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC14.13□□□□□ -0.15
SPTA1P02549 AC141586.1-203ENST00000567242 366 ntBASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms