Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 RAB35-202ENST00000534951 939 ntTSL 2 BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 LINC01922-201ENST00000562582 719 ntBASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 Z97205.2-201ENST00000564697 1639 ntBASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 AC105917.1-201ENST00000506637 2539 ntBASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 CU639417.3-201ENST00000624240 1404 ntBASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 DKFZP434H168-201ENST00000567381 1905 ntBASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 AC009090.5-201ENST00000624886 2285 ntBASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 AC068587.6-202ENST00000641839 5619 ntBASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 KRT18P64-201ENST00000434946 1219 ntBASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 AC017007.3-201ENST00000479865 435 ntBASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 SPDYE18-201ENST00000510091 1050 ntBASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 SDHAP3-202ENST00000515467 728 ntBASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 ZNF890P-202ENST00000530367 1156 ntBASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 STOM-203ENST00000538954 1257 ntTSL 5 BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 AC074044.1-201ENST00000609673 707 ntBASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 TEX48-202ENST00000612244 662 ntTSL 3 BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 AC004840.1-201ENST00000636359 365 ntBASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.22■□□□□ 0.03
CUEDC1Q9NWM3 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CUEDC1Q9NWM3 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms