Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SSU72Q9NP77 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SSU72Q9NP77 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
SSU72Q9NP77 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.57■□□□□ 0.08
SSU72Q9NP77 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC15.57■□□□□ 0.08
SSU72Q9NP77 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC15.57■□□□□ 0.08
SSU72Q9NP77 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SSU72Q9NP77 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC15.57■□□□□ 0.08
SSU72Q9NP77 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SSU72Q9NP77 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC15.57■□□□□ 0.08
SSU72Q9NP77 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
SSU72Q9NP77 ARL16-209ENST00000573715 763 ntTSL 3 BASIC15.57■□□□□ 0.08
SSU72Q9NP77 ARL16-211ENST00000576135 694 ntTSL 3 BASIC15.57■□□□□ 0.08
SSU72Q9NP77 MIR7706-201ENST00000613747 67 ntBASIC15.57■□□□□ 0.08
SSU72Q9NP77 AKAP8P1-201ENST00000434743 1349 ntBASIC15.57■□□□□ 0.08
SSU72Q9NP77 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.57■□□□□ 0.08
SSU72Q9NP77 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC15.57■□□□□ 0.08
SSU72Q9NP77 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SSU72Q9NP77 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
SSU72Q9NP77 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SSU72Q9NP77 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.57■□□□□ 0.08
SSU72Q9NP77 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC15.57■□□□□ 0.08
SSU72Q9NP77 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC15.57■□□□□ 0.08
SSU72Q9NP77 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC15.57■□□□□ 0.08
SSU72Q9NP77 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SSU72Q9NP77 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.57■□□□□ 0.08
SSU72Q9NP77 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
SSU72Q9NP77 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SSU72Q9NP77 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
SSU72Q9NP77 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC15.56■□□□□ 0.08
SSU72Q9NP77 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
SSU72Q9NP77 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SSU72Q9NP77 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
SSU72Q9NP77 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
SSU72Q9NP77 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC15.56■□□□□ 0.08
SSU72Q9NP77 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.56■□□□□ 0.08
SSU72Q9NP77 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC15.56■□□□□ 0.08
SSU72Q9NP77 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC15.56■□□□□ 0.08
SSU72Q9NP77 CBR1-202ENST00000399191 838 ntTSL 3 BASIC15.56■□□□□ 0.08
SSU72Q9NP77 PPIE-208ENST00000470213 927 ntTSL 3 BASIC15.56■□□□□ 0.08
SSU72Q9NP77 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC15.56■□□□□ 0.08
SSU72Q9NP77 AC079776.4-201ENST00000511039 504 ntBASIC15.56■□□□□ 0.08
SSU72Q9NP77 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC15.56■□□□□ 0.08
SSU72Q9NP77 AP002472.1-201ENST00000577490 586 ntBASIC15.56■□□□□ 0.08
SSU72Q9NP77 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC15.56■□□□□ 0.08
SSU72Q9NP77 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC15.56■□□□□ 0.08
SSU72Q9NP77 AC099522.2-201ENST00000607001 744 ntBASIC15.56■□□□□ 0.08
SSU72Q9NP77 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SSU72Q9NP77 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.56■□□□□ 0.08
SSU72Q9NP77 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC15.56■□□□□ 0.08
SSU72Q9NP77 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SSU72Q9NP77 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SSU72Q9NP77 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
SSU72Q9NP77 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC15.56■□□□□ 0.08
SSU72Q9NP77 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SSU72Q9NP77 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC15.56■□□□□ 0.08
SSU72Q9NP77 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SSU72Q9NP77 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SSU72Q9NP77 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SSU72Q9NP77 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SSU72Q9NP77 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC15.56■□□□□ 0.08
SSU72Q9NP77 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SSU72Q9NP77 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC15.56■□□□□ 0.08
SSU72Q9NP77 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
SSU72Q9NP77 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SSU72Q9NP77 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SSU72Q9NP77 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
SSU72Q9NP77 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
SSU72Q9NP77 AC027601.5-201ENST00000624065 2482 ntBASIC15.55■□□□□ 0.08
SSU72Q9NP77 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC15.55■□□□□ 0.08
SSU72Q9NP77 MTHFR-210ENST00000641407 2387 ntBASIC15.55■□□□□ 0.08
SSU72Q9NP77 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SSU72Q9NP77 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SSU72Q9NP77 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC15.55■□□□□ 0.08
SSU72Q9NP77 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SSU72Q9NP77 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
SSU72Q9NP77 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15.55■□□□□ 0.08
SSU72Q9NP77 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.55■□□□□ 0.08
SSU72Q9NP77 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
SSU72Q9NP77 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SSU72Q9NP77 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SSU72Q9NP77 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
SSU72Q9NP77 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SSU72Q9NP77 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
SSU72Q9NP77 UNC93B7-201ENST00000509439 705 ntBASIC15.55■□□□□ 0.08
SSU72Q9NP77 RNA5SP415-201ENST00000517246 115 ntBASIC15.55■□□□□ 0.08
SSU72Q9NP77 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC15.55■□□□□ 0.08
SSU72Q9NP77 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC15.55■□□□□ 0.08
SSU72Q9NP77 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC15.55■□□□□ 0.08
SSU72Q9NP77 SERF2-217ENST00000630046 862 ntTSL 5 BASIC15.55■□□□□ 0.08
SSU72Q9NP77 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
SSU72Q9NP77 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC15.55■□□□□ 0.08
SSU72Q9NP77 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
SSU72Q9NP77 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SSU72Q9NP77 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SSU72Q9NP77 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
SSU72Q9NP77 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC15.55■□□□□ 0.08
SSU72Q9NP77 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
SSU72Q9NP77 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SSU72Q9NP77 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms