Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 ACTG1P3-201ENST00000431775 1114 ntBASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 MIR5189-201ENST00000577370 114 ntBASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 BRI3BPP1-201ENST00000594224 787 ntBASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 RPS24-214ENST00000613865 538 ntTSL 5 BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
TM9SF3Q9HD45 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.71■□□□□ 0.1
TM9SF3Q9HD45 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
TM9SF3Q9HD45 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 AMT-232ENST00000636199 1546 ntTSL 5 BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 RPF1-202ENST00000370656 724 ntTSL 2 BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 NME4-207ENST00000450036 985 ntTSL 3 BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 TDH-203ENST00000531764 1110 ntBASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 AL359711.2-201ENST00000563105 872 ntBASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 RERG-209ENST00000546331 1383 ntTSL 2 BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 HNRNPA1P48-201ENST00000562726 1377 ntBASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 MYB-242ENST00000618728 3545 ntTSL 5 BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TM9SF3Q9HD45 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
TM9SF3Q9HD45 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TM9SF3Q9HD45 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC15.69■□□□□ 0.1
TM9SF3Q9HD45 REXO1L8P-201ENST00000604378 1897 ntBASIC15.69■□□□□ 0.1
TM9SF3Q9HD45 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
TM9SF3Q9HD45 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TM9SF3Q9HD45 PDIA3P1-201ENST00000471856 1510 ntBASIC15.69■□□□□ 0.1
TM9SF3Q9HD45 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC15.69■□□□□ 0.1
TM9SF3Q9HD45 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
TM9SF3Q9HD45 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
TM9SF3Q9HD45 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms