Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
MMP28Q9H239 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MMP28Q9H239 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MMP28Q9H239 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC13.97□□□□□ -0.17
MMP28Q9H239 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MMP28Q9H239 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
MMP28Q9H239 REXO1L2P-201ENST00000425429 2069 ntBASIC13.97□□□□□ -0.17
MMP28Q9H239 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MMP28Q9H239 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC13.97□□□□□ -0.17
MMP28Q9H239 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC13.97□□□□□ -0.17
MMP28Q9H239 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
MMP28Q9H239 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC13.96□□□□□ -0.17
MMP28Q9H239 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC13.96□□□□□ -0.17
MMP28Q9H239 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
MMP28Q9H239 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
MMP28Q9H239 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
MMP28Q9H239 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
MMP28Q9H239 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC13.96□□□□□ -0.17
MMP28Q9H239 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
MMP28Q9H239 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
MMP28Q9H239 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
MMP28Q9H239 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
MMP28Q9H239 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
MMP28Q9H239 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
MMP28Q9H239 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
MMP28Q9H239 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
MMP28Q9H239 AC027601.5-201ENST00000624065 2482 ntBASIC13.96□□□□□ -0.17
MMP28Q9H239 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
MMP28Q9H239 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
MMP28Q9H239 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
MMP28Q9H239 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
MMP28Q9H239 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
MMP28Q9H239 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
MMP28Q9H239 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC13.96□□□□□ -0.17
MMP28Q9H239 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
MMP28Q9H239 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
MMP28Q9H239 AL031284.1-201ENST00000419297 478 ntBASIC13.96□□□□□ -0.17
MMP28Q9H239 AC018712.1-201ENST00000455767 687 ntBASIC13.96□□□□□ -0.17
MMP28Q9H239 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
MMP28Q9H239 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC13.96□□□□□ -0.17
MMP28Q9H239 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC13.96□□□□□ -0.17
MMP28Q9H239 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC13.96□□□□□ -0.17
MMP28Q9H239 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC13.96□□□□□ -0.17
MMP28Q9H239 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC13.96□□□□□ -0.17
MMP28Q9H239 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
MMP28Q9H239 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC13.96□□□□□ -0.17
MMP28Q9H239 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
MMP28Q9H239 AC148477.8-201ENST00000624298 468 ntBASIC13.96□□□□□ -0.17
MMP28Q9H239 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
MMP28Q9H239 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC13.96□□□□□ -0.17
MMP28Q9H239 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
MMP28Q9H239 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
MMP28Q9H239 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC13.96□□□□□ -0.17
MMP28Q9H239 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
MMP28Q9H239 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
MMP28Q9H239 APP-205ENST00000358918 2366 ntTSL 5 BASIC13.96□□□□□ -0.18
MMP28Q9H239 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.18
MMP28Q9H239 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
MMP28Q9H239 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
MMP28Q9H239 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
MMP28Q9H239 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC13.96□□□□□ -0.18
MMP28Q9H239 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC13.95□□□□□ -0.18
MMP28Q9H239 AC126335.2-201ENST00000623362 4637 ntBASIC13.95□□□□□ -0.18
MMP28Q9H239 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC13.95□□□□□ -0.18
MMP28Q9H239 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
MMP28Q9H239 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
MMP28Q9H239 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MMP28Q9H239 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC13.95□□□□□ -0.18
MMP28Q9H239 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
MMP28Q9H239 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC13.95□□□□□ -0.18
MMP28Q9H239 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MMP28Q9H239 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC13.95□□□□□ -0.18
MMP28Q9H239 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MMP28Q9H239 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC13.95□□□□□ -0.18
MMP28Q9H239 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MMP28Q9H239 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC13.95□□□□□ -0.18
MMP28Q9H239 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC13.95□□□□□ -0.18
MMP28Q9H239 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC13.95□□□□□ -0.18
MMP28Q9H239 INIP-202ENST00000374236 874 ntTSL 2 BASIC13.95□□□□□ -0.18
MMP28Q9H239 PMS2P1-201ENST00000431037 1228 ntBASIC13.95□□□□□ -0.18
MMP28Q9H239 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC13.95□□□□□ -0.18
MMP28Q9H239 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC13.95□□□□□ -0.18
MMP28Q9H239 AC093909.1-201ENST00000504731 1122 ntBASIC13.95□□□□□ -0.18
MMP28Q9H239 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC13.95□□□□□ -0.18
MMP28Q9H239 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
MMP28Q9H239 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC13.95□□□□□ -0.18
MMP28Q9H239 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC13.95□□□□□ -0.18
MMP28Q9H239 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC13.95□□□□□ -0.18
MMP28Q9H239 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
MMP28Q9H239 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MMP28Q9H239 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC13.95□□□□□ -0.18
MMP28Q9H239 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC13.95□□□□□ -0.18
MMP28Q9H239 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
MMP28Q9H239 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
MMP28Q9H239 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
MMP28Q9H239 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC13.95□□□□□ -0.18
MMP28Q9H239 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MMP28Q9H239 AC008677.1-201ENST00000519230 1561 ntBASIC13.95□□□□□ -0.18
MMP28Q9H239 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MMP28Q9H239 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms