Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
VRK1Q99986 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VRK1Q99986 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VRK1Q99986 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC13.97□□□□□ -0.17
VRK1Q99986 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
VRK1Q99986 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VRK1Q99986 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC13.97□□□□□ -0.17
VRK1Q99986 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
VRK1Q99986 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VRK1Q99986 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VRK1Q99986 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC13.97□□□□□ -0.17
VRK1Q99986 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VRK1Q99986 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
VRK1Q99986 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VRK1Q99986 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VRK1Q99986 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VRK1Q99986 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC13.97□□□□□ -0.17
VRK1Q99986 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC13.97□□□□□ -0.17
VRK1Q99986 MTND6P24-201ENST00000440466 518 ntBASIC13.97□□□□□ -0.17
VRK1Q99986 LHX6-205ENST00000464484 666 ntTSL 2 BASIC13.97□□□□□ -0.17
VRK1Q99986 AC098859.1-201ENST00000502915 1238 ntBASIC13.97□□□□□ -0.17
VRK1Q99986 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC13.97□□□□□ -0.17
VRK1Q99986 AC097493.3-201ENST00000509725 367 ntBASIC13.97□□□□□ -0.17
VRK1Q99986 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC13.97□□□□□ -0.17
VRK1Q99986 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VRK1Q99986 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC13.97□□□□□ -0.17
VRK1Q99986 SNX18-202ENST00000343017 3140 ntBASIC13.97□□□□□ -0.17
VRK1Q99986 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
VRK1Q99986 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
VRK1Q99986 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC13.97□□□□□ -0.17
VRK1Q99986 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC13.97□□□□□ -0.17
VRK1Q99986 OR2I1P-210ENST00000642037 4691 ntBASIC13.97□□□□□ -0.17
VRK1Q99986 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC13.97□□□□□ -0.17
VRK1Q99986 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VRK1Q99986 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
VRK1Q99986 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
VRK1Q99986 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
VRK1Q99986 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VRK1Q99986 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
VRK1Q99986 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
VRK1Q99986 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VRK1Q99986 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VRK1Q99986 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VRK1Q99986 GRAMD4P3-201ENST00000621665 1669 ntBASIC13.97□□□□□ -0.17
VRK1Q99986 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC13.97□□□□□ -0.17
VRK1Q99986 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VRK1Q99986 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
VRK1Q99986 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VRK1Q99986 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VRK1Q99986 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC13.97□□□□□ -0.17
VRK1Q99986 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC13.97□□□□□ -0.17
VRK1Q99986 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VRK1Q99986 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
VRK1Q99986 SUPT20HL2-201ENST00000486479 2409 ntBASIC13.96□□□□□ -0.17
VRK1Q99986 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
VRK1Q99986 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
VRK1Q99986 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC13.96□□□□□ -0.17
VRK1Q99986 AL512652.2-201ENST00000625156 1716 ntBASIC13.96□□□□□ -0.17
VRK1Q99986 AP005117.1-202ENST00000581724 1908 ntBASIC13.96□□□□□ -0.17
VRK1Q99986 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC13.96□□□□□ -0.17
VRK1Q99986 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
VRK1Q99986 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
VRK1Q99986 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
VRK1Q99986 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC13.96□□□□□ -0.17
VRK1Q99986 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
VRK1Q99986 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC13.96□□□□□ -0.17
VRK1Q99986 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
VRK1Q99986 CALY-203ENST00000368558 825 ntTSL 5 BASIC13.96□□□□□ -0.17
VRK1Q99986 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
VRK1Q99986 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
VRK1Q99986 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
VRK1Q99986 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC13.96□□□□□ -0.17
VRK1Q99986 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
VRK1Q99986 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC13.96□□□□□ -0.17
VRK1Q99986 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC13.96□□□□□ -0.17
VRK1Q99986 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
VRK1Q99986 AC073592.8-201ENST00000624126 511 ntBASIC13.96□□□□□ -0.17
VRK1Q99986 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
VRK1Q99986 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
VRK1Q99986 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
VRK1Q99986 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
VRK1Q99986 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC13.96□□□□□ -0.17
VRK1Q99986 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
VRK1Q99986 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
VRK1Q99986 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
VRK1Q99986 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC13.96□□□□□ -0.18
VRK1Q99986 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
VRK1Q99986 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
VRK1Q99986 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC13.96□□□□□ -0.18
VRK1Q99986 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
VRK1Q99986 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC13.96□□□□□ -0.18
VRK1Q99986 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
VRK1Q99986 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC13.96□□□□□ -0.18
VRK1Q99986 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC13.96□□□□□ -0.18
VRK1Q99986 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VRK1Q99986 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC13.95□□□□□ -0.18
VRK1Q99986 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC13.95□□□□□ -0.18
VRK1Q99986 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC13.95□□□□□ -0.18
VRK1Q99986 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VRK1Q99986 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms