Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC25.19■■□□□ 1.62
IFT140Q96RY7 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
IFT140Q96RY7 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC25.19■■□□□ 1.62
IFT140Q96RY7 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
IFT140Q96RY7 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
IFT140Q96RY7 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
IFT140Q96RY7 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
IFT140Q96RY7 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC25.19■■□□□ 1.62
IFT140Q96RY7 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
IFT140Q96RY7 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC25.19■■□□□ 1.62
IFT140Q96RY7 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC25.19■■□□□ 1.62
IFT140Q96RY7 RN7SL81P-201ENST00000493781 261 ntBASIC25.19■■□□□ 1.62
IFT140Q96RY7 POLD4-208ENST00000532830 904 ntTSL 3 BASIC25.19■■□□□ 1.62
IFT140Q96RY7 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC25.19■■□□□ 1.62
IFT140Q96RY7 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
IFT140Q96RY7 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC25.19■■□□□ 1.62
IFT140Q96RY7 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC25.19■■□□□ 1.62
IFT140Q96RY7 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC25.19■■□□□ 1.62
IFT140Q96RY7 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC25.19■■□□□ 1.62
IFT140Q96RY7 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC25.19■■□□□ 1.62
IFT140Q96RY7 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC25.19■■□□□ 1.62
IFT140Q96RY7 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
IFT140Q96RY7 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
IFT140Q96RY7 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
IFT140Q96RY7 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
IFT140Q96RY7 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC25.18■■□□□ 1.62
IFT140Q96RY7 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC25.18■■□□□ 1.62
IFT140Q96RY7 AL592076.1-201ENST00000424448 303 ntBASIC25.18■■□□□ 1.62
IFT140Q96RY7 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC25.18■■□□□ 1.62
IFT140Q96RY7 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC25.18■■□□□ 1.62
IFT140Q96RY7 ORAOV1P1-201ENST00000503108 395 ntBASIC25.18■■□□□ 1.62
IFT140Q96RY7 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC25.18■■□□□ 1.62
IFT140Q96RY7 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC25.18■■□□□ 1.62
IFT140Q96RY7 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC25.18■■□□□ 1.62
IFT140Q96RY7 AC008825.2-201ENST00000603374 718 ntBASIC25.18■■□□□ 1.62
IFT140Q96RY7 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC25.18■■□□□ 1.62
IFT140Q96RY7 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC25.18■■□□□ 1.62
IFT140Q96RY7 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC25.18■■□□□ 1.62
IFT140Q96RY7 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC25.18■■□□□ 1.62
IFT140Q96RY7 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC25.18■■□□□ 1.62
IFT140Q96RY7 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
IFT140Q96RY7 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC25.18■■□□□ 1.62
IFT140Q96RY7 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC25.17■■□□□ 1.62
IFT140Q96RY7 RN7SKP230-201ENST00000365642 335 ntBASIC25.17■■□□□ 1.62
IFT140Q96RY7 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
IFT140Q96RY7 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
IFT140Q96RY7 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC25.17■■□□□ 1.62
IFT140Q96RY7 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC25.17■■□□□ 1.62
IFT140Q96RY7 AC107464.3-201ENST00000609172 737 ntBASIC25.17■■□□□ 1.62
IFT140Q96RY7 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
IFT140Q96RY7 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC25.17■■□□□ 1.62
IFT140Q96RY7 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC25.17■■□□□ 1.62
IFT140Q96RY7 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC25.17■■□□□ 1.62
IFT140Q96RY7 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
IFT140Q96RY7 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
IFT140Q96RY7 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
IFT140Q96RY7 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
IFT140Q96RY7 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
IFT140Q96RY7 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
IFT140Q96RY7 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC25.16■■□□□ 1.62
IFT140Q96RY7 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC25.16■■□□□ 1.62
IFT140Q96RY7 AC006122.1-201ENST00000493323 440 ntBASIC25.16■■□□□ 1.62
IFT140Q96RY7 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
IFT140Q96RY7 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC25.16■■□□□ 1.62
IFT140Q96RY7 AC093752.3-201ENST00000567343 901 ntBASIC25.16■■□□□ 1.62
IFT140Q96RY7 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
IFT140Q96RY7 AC087392.5-201ENST00000612517 489 ntBASIC25.16■■□□□ 1.62
IFT140Q96RY7 ETV2-207ENST00000619399 994 ntTSL 5 BASIC25.16■■□□□ 1.62
IFT140Q96RY7 AC138466.5-201ENST00000624002 808 ntBASIC25.16■■□□□ 1.62
IFT140Q96RY7 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
IFT140Q96RY7 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC25.16■■□□□ 1.62
IFT140Q96RY7 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC25.16■■□□□ 1.62
IFT140Q96RY7 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
IFT140Q96RY7 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC25.16■■□□□ 1.62
IFT140Q96RY7 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC25.16■■□□□ 1.62
IFT140Q96RY7 AC006058.4-201ENST00000624016 1670 ntBASIC25.15■■□□□ 1.62
IFT140Q96RY7 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
IFT140Q96RY7 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
IFT140Q96RY7 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
IFT140Q96RY7 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC25.15■■□□□ 1.62
IFT140Q96RY7 MRPL22P1-201ENST00000505398 616 ntBASIC25.15■■□□□ 1.62
IFT140Q96RY7 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
IFT140Q96RY7 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
IFT140Q96RY7 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC25.15■■□□□ 1.62
IFT140Q96RY7 NUDT4P2-201ENST00000578341 546 ntBASIC25.15■■□□□ 1.62
IFT140Q96RY7 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC25.15■■□□□ 1.62
IFT140Q96RY7 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC25.15■■□□□ 1.62
IFT140Q96RY7 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
IFT140Q96RY7 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC25.15■■□□□ 1.62
IFT140Q96RY7 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC25.15■■□□□ 1.62
IFT140Q96RY7 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC25.15■■□□□ 1.62
IFT140Q96RY7 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC25.15■■□□□ 1.62
IFT140Q96RY7 KRT8P31-201ENST00000504812 1408 ntBASIC25.15■■□□□ 1.62
IFT140Q96RY7 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC25.15■■□□□ 1.62
IFT140Q96RY7 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC25.15■■□□□ 1.62
IFT140Q96RY7 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
IFT140Q96RY7 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
IFT140Q96RY7 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC25.15■■□□□ 1.62
IFT140Q96RY7 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC25.15■■□□□ 1.62
IFT140Q96RY7 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms