Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 LINC01225-203ENST00000563550 1244 ntBASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 NAA38-207ENST00000576861 556 ntTSL 3 BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 CICP13-201ENST00000422015 2789 ntBASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC13.76□□□□□ -0.21
CCDC54Q8NEL0 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 TEX30-205ENST00000376029 959 ntTSL 2 BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 SPCS2P4-201ENST00000436160 681 ntBASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 ELP6-209ENST00000446787 894 ntTSL 3 BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC54Q8NEL0 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC13.74□□□□□ -0.21
CCDC54Q8NEL0 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC13.74□□□□□ -0.21
CCDC54Q8NEL0 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC54Q8NEL0 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC54Q8NEL0 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC54Q8NEL0 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
CCDC54Q8NEL0 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC54Q8NEL0 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC13.74□□□□□ -0.21
CCDC54Q8NEL0 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC54Q8NEL0 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC54Q8NEL0 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
CCDC54Q8NEL0 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC54Q8NEL0 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
CCDC54Q8NEL0 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
CCDC54Q8NEL0 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC13.74□□□□□ -0.21
CCDC54Q8NEL0 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC13.74□□□□□ -0.21
CCDC54Q8NEL0 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
CCDC54Q8NEL0 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC54Q8NEL0 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC54Q8NEL0 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
CCDC54Q8NEL0 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
CCDC54Q8NEL0 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC54Q8NEL0 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC13.74□□□□□ -0.21
CCDC54Q8NEL0 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC13.74□□□□□ -0.21
CCDC54Q8NEL0 AC079140.1-201ENST00000508039 487 ntBASIC13.74□□□□□ -0.21
CCDC54Q8NEL0 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC13.74□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms