Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 GMEB2-201ENST00000266068 4559 ntAPPRIS P1 TSL 2 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 KDM3A-216ENST00000542128 4311 ntTSL 5 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 HSCB-202ENST00000398941 955 ntTSL 2 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 AC004980.1-204ENST00000429707 299 ntBASIC9.74□□□□□ -0.85
LINC00643Q86TS7 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 AC019129.2-201ENST00000609837 1235 ntBASIC9.74□□□□□ -0.85
LINC00643Q86TS7 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 AC073957.3-201ENST00000609998 6758 ntBASIC9.74□□□□□ -0.85
LINC00643Q86TS7 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 ITGAX-201ENST00000268296 4703 ntAPPRIS P3 TSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 AC016582.3-202ENST00000443870 6580 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 TNRC6C-207ENST00000588847 8527 ntAPPRIS P4 TSL 5 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 RHPN1-AS1-201ENST00000518049 1918 ntBASIC9.74□□□□□ -0.85
LINC00643Q86TS7 TRIM69-206ENST00000559390 2486 ntAPPRIS P1 TSL 2 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 PREX1-201ENST00000371941 6636 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 EWSAT1-201ENST00000415504 2214 ntTSL 2 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 KAZN-205ENST00000400798 3643 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 COPS7B-201ENST00000350033 2544 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 TDRD9-202ENST00000409874 4782 ntAPPRIS P1 TSL 5 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 SIX1-203ENST00000554986 1959 ntTSL 3 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 AL357140.3-201ENST00000639753 1983 ntBASIC9.74□□□□□ -0.85
LINC00643Q86TS7 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 SNX33-201ENST00000308527 8008 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 KRT42P-202ENST00000438131 2895 ntTSL 2 BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 ESYT1-202ENST00000394048 4388 ntAPPRIS P3 TSL 1 (best) BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 GBF1-201ENST00000369983 6403 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 RIPK4-201ENST00000332512 3889 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 AP1B1-202ENST00000357586 4176 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 GOLGA6L4-202ENST00000422563 4155 ntAPPRIS ALT2 TSL 5 BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 CPT1C-204ENST00000405931 2785 ntAPPRIS ALT2 TSL 1 (best) BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 SUPV3L1-201ENST00000359655 2484 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 NEXN-201ENST00000330010 3195 ntTSL 2 BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 AP001330.3-201ENST00000520123 633 ntBASIC9.73□□□□□ -0.85
LINC00643Q86TS7 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 PRKY-204ENST00000533551 1019 ntBASIC9.73□□□□□ -0.85
LINC00643Q86TS7 AC010240.3-201ENST00000607688 395 ntBASIC9.73□□□□□ -0.85
LINC00643Q86TS7 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 AC112497.1-201ENST00000624824 639 ntBASIC9.73□□□□□ -0.85
LINC00643Q86TS7 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 RIMS1-218ENST00000522291 3876 ntTSL 5 BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 SLC26A6-207ENST00000420764 2630 ntAPPRIS ALT1 TSL 1 (best) BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 CACNA2D2-202ENST00000360963 5272 ntAPPRIS ALT2 TSL 1 (best) BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 C10orf90-202ENST00000356858 2995 ntAPPRIS ALT2 TSL 5 BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 TRPM2-203ENST00000397928 6221 ntAPPRIS P3 TSL 1 (best) BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
LINC00643Q86TS7 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 PER3-208ENST00000613533 6318 ntAPPRIS ALT2 TSL 5 BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 PHLDB1-201ENST00000356063 5240 ntAPPRIS ALT2 TSL 2 BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 CARHSP1-202ENST00000396593 3026 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 GGA3-214ENST00000582717 2255 ntTSL 2 BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC9.72□□□□□ -0.85
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms