Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 RN7SL48P-201ENST00000579283 293 ntBASIC18.34■□□□□ 0.53
RHBDL3P58872 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
RHBDL3P58872 ECM1P1-201ENST00000604092 1279 ntBASIC18.34■□□□□ 0.53
RHBDL3P58872 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC18.34■□□□□ 0.53
RHBDL3P58872 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC18.34■□□□□ 0.53
RHBDL3P58872 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
RHBDL3P58872 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RHBDL3P58872 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RHBDL3P58872 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RHBDL3P58872 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RHBDL3P58872 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RHBDL3P58872 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RHBDL3P58872 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
RHBDL3P58872 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RHBDL3P58872 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
RHBDL3P58872 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC18.33■□□□□ 0.53
RHBDL3P58872 AP005117.1-202ENST00000581724 1908 ntBASIC18.33■□□□□ 0.53
RHBDL3P58872 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RHBDL3P58872 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
RHBDL3P58872 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RHBDL3P58872 KRT8P14-201ENST00000414254 1442 ntBASIC18.33■□□□□ 0.53
RHBDL3P58872 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.33■□□□□ 0.53
RHBDL3P58872 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
RHBDL3P58872 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
RHBDL3P58872 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RHBDL3P58872 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RHBDL3P58872 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC18.33■□□□□ 0.53
RHBDL3P58872 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
RHBDL3P58872 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC18.33■□□□□ 0.52
RHBDL3P58872 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC18.33■□□□□ 0.52
RHBDL3P58872 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RHBDL3P58872 MIR1202-201ENST00000408529 83 ntBASIC18.33■□□□□ 0.52
RHBDL3P58872 GOLGA2P4-201ENST00000441462 777 ntBASIC18.33■□□□□ 0.52
RHBDL3P58872 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
RHBDL3P58872 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC18.33■□□□□ 0.52
RHBDL3P58872 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC18.33■□□□□ 0.52
RHBDL3P58872 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC18.33■□□□□ 0.52
RHBDL3P58872 INO80C-210ENST00000590757 595 ntTSL 2 BASIC18.33■□□□□ 0.52
RHBDL3P58872 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC18.33■□□□□ 0.52
RHBDL3P58872 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC18.33■□□□□ 0.52
RHBDL3P58872 MIR6787-201ENST00000616675 61 ntBASIC18.33■□□□□ 0.52
RHBDL3P58872 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RHBDL3P58872 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
RHBDL3P58872 AC026691.1-201ENST00000602502 2017 ntBASIC18.33■□□□□ 0.52
RHBDL3P58872 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RHBDL3P58872 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RHBDL3P58872 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RHBDL3P58872 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC18.33■□□□□ 0.52
RHBDL3P58872 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RHBDL3P58872 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.33■□□□□ 0.52
RHBDL3P58872 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RHBDL3P58872 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
RHBDL3P58872 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
RHBDL3P58872 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RHBDL3P58872 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
RHBDL3P58872 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RHBDL3P58872 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC18.32■□□□□ 0.52
RHBDL3P58872 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RHBDL3P58872 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RHBDL3P58872 TNRC18P3-201ENST00000441896 2691 ntBASIC18.32■□□□□ 0.52
RHBDL3P58872 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RHBDL3P58872 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
RHBDL3P58872 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC18.32■□□□□ 0.52
RHBDL3P58872 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
RHBDL3P58872 RPS15-201ENST00000233609 534 ntTSL 2 BASIC18.32■□□□□ 0.52
RHBDL3P58872 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RHBDL3P58872 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
RHBDL3P58872 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
RHBDL3P58872 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
RHBDL3P58872 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
RHBDL3P58872 AC104457.1-201ENST00000401024 814 ntBASIC18.32■□□□□ 0.52
RHBDL3P58872 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
RHBDL3P58872 LSM5-207ENST00000410044 687 ntTSL 3 BASIC18.32■□□□□ 0.52
RHBDL3P58872 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC18.32■□□□□ 0.52
RHBDL3P58872 EIF3FP3-201ENST00000434851 1086 ntBASIC18.32■□□□□ 0.52
RHBDL3P58872 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC18.32■□□□□ 0.52
RHBDL3P58872 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
RHBDL3P58872 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC18.32■□□□□ 0.52
RHBDL3P58872 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
RHBDL3P58872 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC18.32■□□□□ 0.52
RHBDL3P58872 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC18.32■□□□□ 0.52
RHBDL3P58872 DERL2-202ENST00000570848 657 ntTSL 5 BASIC18.32■□□□□ 0.52
RHBDL3P58872 SAMD11P1-201ENST00000571429 661 ntBASIC18.32■□□□□ 0.52
RHBDL3P58872 RPS15-205ENST00000586686 562 ntTSL 5 BASIC18.32■□□□□ 0.52
RHBDL3P58872 RPS15-208ENST00000591804 711 ntTSL 5 BASIC18.32■□□□□ 0.52
RHBDL3P58872 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RHBDL3P58872 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC18.32■□□□□ 0.52
RHBDL3P58872 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC18.32■□□□□ 0.52
RHBDL3P58872 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
RHBDL3P58872 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RHBDL3P58872 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC18.32■□□□□ 0.52
RHBDL3P58872 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RHBDL3P58872 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RHBDL3P58872 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
RHBDL3P58872 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
RHBDL3P58872 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RHBDL3P58872 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RHBDL3P58872 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC18.32■□□□□ 0.52
RHBDL3P58872 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
RHBDL3P58872 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms