Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC16.43■□□□□ 0.22
HDAC4P56524 ORC5-208ENST00000626700 344 ntTSL 3 BASIC16.43■□□□□ 0.22
HDAC4P56524 AL109936.8-201ENST00000641772 604 ntBASIC16.43■□□□□ 0.22
HDAC4P56524 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC16.43■□□□□ 0.22
HDAC4P56524 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
HDAC4P56524 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.43■□□□□ 0.22
HDAC4P56524 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC4P56524 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC4P56524 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC4P56524 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC4P56524 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC4P56524 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
HDAC4P56524 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC4P56524 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC4P56524 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC4P56524 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.43■□□□□ 0.22
HDAC4P56524 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC16.42■□□□□ 0.22
HDAC4P56524 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.42■□□□□ 0.22
HDAC4P56524 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC4P56524 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC4P56524 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
HDAC4P56524 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC4P56524 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC4P56524 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC4P56524 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
HDAC4P56524 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC4P56524 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
HDAC4P56524 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC4P56524 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC4P56524 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC4P56524 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC16.42■□□□□ 0.22
HDAC4P56524 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC16.42■□□□□ 0.22
HDAC4P56524 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC16.42■□□□□ 0.22
HDAC4P56524 RPL13P2-201ENST00000440687 659 ntBASIC16.42■□□□□ 0.22
HDAC4P56524 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC16.42■□□□□ 0.22
HDAC4P56524 CYMP-203ENST00000474680 1263 ntBASIC16.42■□□□□ 0.22
HDAC4P56524 AC004890.2-204ENST00000481968 304 ntBASIC16.42■□□□□ 0.22
HDAC4P56524 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC16.42■□□□□ 0.22
HDAC4P56524 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC16.42■□□□□ 0.22
HDAC4P56524 AC009407.1-201ENST00000568958 598 ntBASIC16.42■□□□□ 0.22
HDAC4P56524 LINC01115-203ENST00000606068 577 ntBASIC16.42■□□□□ 0.22
HDAC4P56524 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC4P56524 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC4P56524 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
HDAC4P56524 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC4P56524 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC4P56524 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC4P56524 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC4P56524 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC4P56524 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
HDAC4P56524 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC4P56524 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC4P56524 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC4P56524 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC4P56524 AC022532.1-201ENST00000624563 1728 ntBASIC16.42■□□□□ 0.22
HDAC4P56524 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.42■□□□□ 0.22
HDAC4P56524 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC4P56524 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC4P56524 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
HDAC4P56524 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC4P56524 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC4P56524 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC16.42■□□□□ 0.22
HDAC4P56524 AC087481.3-201ENST00000602886 1894 ntBASIC16.42■□□□□ 0.22
HDAC4P56524 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC4P56524 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC16.41■□□□□ 0.22
HDAC4P56524 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC16.41■□□□□ 0.22
HDAC4P56524 API5-202ENST00000420461 2009 ntTSL 2 BASIC16.41■□□□□ 0.22
HDAC4P56524 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC16.41■□□□□ 0.22
HDAC4P56524 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC16.41■□□□□ 0.22
HDAC4P56524 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC4P56524 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC4P56524 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC4P56524 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC16.41■□□□□ 0.22
HDAC4P56524 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC4P56524 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
HDAC4P56524 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC4P56524 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC16.41■□□□□ 0.22
HDAC4P56524 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC4P56524 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC4P56524 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.41■□□□□ 0.22
HDAC4P56524 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC4P56524 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC4P56524 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
HDAC4P56524 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC4P56524 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC16.41■□□□□ 0.22
HDAC4P56524 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC4P56524 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.41■□□□□ 0.22
HDAC4P56524 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.41■□□□□ 0.22
HDAC4P56524 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC4P56524 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC16.41■□□□□ 0.22
HDAC4P56524 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC16.41■□□□□ 0.22
HDAC4P56524 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.41■□□□□ 0.22
HDAC4P56524 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC16.41■□□□□ 0.22
HDAC4P56524 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC16.41■□□□□ 0.22
HDAC4P56524 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC16.41■□□□□ 0.22
HDAC4P56524 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC16.41■□□□□ 0.22
HDAC4P56524 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC16.41■□□□□ 0.22
HDAC4P56524 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC16.41■□□□□ 0.22
HDAC4P56524 SDHAP3-202ENST00000515467 728 ntBASIC16.41■□□□□ 0.22
HDAC4P56524 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms