Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LIM2P55344 AC006058.4-201ENST00000624016 1670 ntBASIC14.9□□□□□ -0.02
LIM2P55344 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LIM2P55344 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LIM2P55344 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LIM2P55344 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC14.9□□□□□ -0.02
LIM2P55344 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LIM2P55344 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LIM2P55344 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LIM2P55344 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LIM2P55344 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LIM2P55344 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC14.9□□□□□ -0.02
LIM2P55344 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
LIM2P55344 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC14.9□□□□□ -0.02
LIM2P55344 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
LIM2P55344 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
LIM2P55344 FAM8A3P-201ENST00000427218 844 ntBASIC14.9□□□□□ -0.02
LIM2P55344 KRT18P64-201ENST00000434946 1219 ntBASIC14.9□□□□□ -0.02
LIM2P55344 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC14.9□□□□□ -0.02
LIM2P55344 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC14.9□□□□□ -0.02
LIM2P55344 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC14.9□□□□□ -0.02
LIM2P55344 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
LIM2P55344 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LIM2P55344 AC135586.1-201ENST00000539323 574 ntBASIC14.9□□□□□ -0.02
LIM2P55344 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.9□□□□□ -0.02
LIM2P55344 CMC2-214ENST00000565925 640 ntTSL 5 BASIC14.9□□□□□ -0.02
LIM2P55344 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC14.9□□□□□ -0.02
LIM2P55344 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LIM2P55344 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
LIM2P55344 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
LIM2P55344 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LIM2P55344 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
LIM2P55344 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LIM2P55344 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LIM2P55344 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LIM2P55344 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LIM2P55344 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LIM2P55344 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC14.9□□□□□ -0.02
LIM2P55344 MST1L-201ENST00000442552 2185 ntBASIC14.9□□□□□ -0.02
LIM2P55344 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC14.9□□□□□ -0.02
LIM2P55344 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
LIM2P55344 AC127383.1-201ENST00000444697 1800 ntBASIC14.89□□□□□ -0.03
LIM2P55344 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LIM2P55344 AC105250.1-201ENST00000509378 2057 ntBASIC14.89□□□□□ -0.03
LIM2P55344 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
LIM2P55344 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LIM2P55344 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC14.89□□□□□ -0.03
LIM2P55344 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LIM2P55344 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LIM2P55344 AL109954.1-202ENST00000564051 2148 ntBASIC14.89□□□□□ -0.03
LIM2P55344 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LIM2P55344 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LIM2P55344 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC14.89□□□□□ -0.03
LIM2P55344 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC14.89□□□□□ -0.03
LIM2P55344 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LIM2P55344 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC14.89□□□□□ -0.03
LIM2P55344 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LIM2P55344 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.89□□□□□ -0.03
LIM2P55344 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.89□□□□□ -0.03
LIM2P55344 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC14.89□□□□□ -0.03
LIM2P55344 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LIM2P55344 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LIM2P55344 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.89□□□□□ -0.03
LIM2P55344 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC14.89□□□□□ -0.03
LIM2P55344 UGT1A2P-201ENST00000454886 866 ntBASIC14.89□□□□□ -0.03
LIM2P55344 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC14.89□□□□□ -0.03
LIM2P55344 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
LIM2P55344 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC14.89□□□□□ -0.03
LIM2P55344 AJ011932.1-201ENST00000621707 465 ntBASIC14.89□□□□□ -0.03
LIM2P55344 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC14.89□□□□□ -0.03
LIM2P55344 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
LIM2P55344 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LIM2P55344 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC14.89□□□□□ -0.03
LIM2P55344 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
LIM2P55344 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LIM2P55344 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
LIM2P55344 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LIM2P55344 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LIM2P55344 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LIM2P55344 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC14.89□□□□□ -0.03
LIM2P55344 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
LIM2P55344 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LIM2P55344 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
LIM2P55344 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LIM2P55344 API5-202ENST00000420461 2009 ntTSL 2 BASIC14.88□□□□□ -0.03
LIM2P55344 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
LIM2P55344 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC14.88□□□□□ -0.03
LIM2P55344 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIM2P55344 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
LIM2P55344 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
LIM2P55344 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIM2P55344 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LIM2P55344 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIM2P55344 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
LIM2P55344 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIM2P55344 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIM2P55344 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LIM2P55344 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC14.88□□□□□ -0.03
LIM2P55344 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIM2P55344 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms