Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 Six3os1_5.1-201ENST00000611000 271 ntBASIC13.37□□□□□ -0.27
USF1P22415 AC005702.4-201ENST00000618393 416 ntBASIC13.37□□□□□ -0.27
USF1P22415 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC13.37□□□□□ -0.27
USF1P22415 AL033527.5-201ENST00000641382 801 ntBASIC13.37□□□□□ -0.27
USF1P22415 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC13.37□□□□□ -0.27
USF1P22415 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC13.37□□□□□ -0.27
USF1P22415 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
USF1P22415 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC13.37□□□□□ -0.27
USF1P22415 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC13.37□□□□□ -0.27
USF1P22415 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
USF1P22415 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
USF1P22415 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
USF1P22415 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
USF1P22415 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
USF1P22415 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC13.37□□□□□ -0.27
USF1P22415 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
USF1P22415 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC13.37□□□□□ -0.27
USF1P22415 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
USF1P22415 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
USF1P22415 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC13.37□□□□□ -0.27
USF1P22415 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC13.36□□□□□ -0.27
USF1P22415 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC13.36□□□□□ -0.27
USF1P22415 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC13.36□□□□□ -0.27
USF1P22415 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
USF1P22415 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC13.36□□□□□ -0.27
USF1P22415 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
USF1P22415 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC13.36□□□□□ -0.27
USF1P22415 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
USF1P22415 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC13.36□□□□□ -0.27
USF1P22415 NSL1-201ENST00000366976 722 ntTSL 2 BASIC13.36□□□□□ -0.27
USF1P22415 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
USF1P22415 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
USF1P22415 RPL28-204ENST00000431533 590 ntTSL 2 BASIC13.36□□□□□ -0.27
USF1P22415 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC13.36□□□□□ -0.27
USF1P22415 AC022210.1-201ENST00000449856 793 ntBASIC13.36□□□□□ -0.27
USF1P22415 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC13.36□□□□□ -0.27
USF1P22415 RHOA-206ENST00000454011 889 ntTSL 2 BASIC13.36□□□□□ -0.27
USF1P22415 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC13.36□□□□□ -0.27
USF1P22415 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC13.36□□□□□ -0.27
USF1P22415 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC13.36□□□□□ -0.27
USF1P22415 RPL28-206ENST00000558752 671 ntTSL 3 BASIC13.36□□□□□ -0.27
USF1P22415 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC13.36□□□□□ -0.27
USF1P22415 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC13.36□□□□□ -0.27
USF1P22415 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 WFDC1-204ENST00000613603 549 ntBASIC13.36□□□□□ -0.27
USF1P22415 MIR8072-201ENST00000614241 80 ntBASIC13.36□□□□□ -0.27
USF1P22415 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
USF1P22415 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC13.36□□□□□ -0.27
USF1P22415 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
USF1P22415 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
USF1P22415 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
USF1P22415 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC13.36□□□□□ -0.27
USF1P22415 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
USF1P22415 CLK3P2-201ENST00000427566 1453 ntBASIC13.36□□□□□ -0.27
USF1P22415 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
USF1P22415 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC13.35□□□□□ -0.27
USF1P22415 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
USF1P22415 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
USF1P22415 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC13.35□□□□□ -0.27
USF1P22415 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
USF1P22415 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC13.35□□□□□ -0.27
USF1P22415 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
USF1P22415 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
USF1P22415 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
USF1P22415 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
USF1P22415 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
USF1P22415 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
USF1P22415 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
USF1P22415 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
USF1P22415 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms